* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘shinyWGD’ ...
** this is package ‘shinyWGD’ version ‘1.0.0’
** package ‘shinyWGD’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘shinyWGD’
    finding HTML links ... done
    CalHomoConcentration                    html  
    CalPvalue                               html  
    CountOrthologs                          html  
    PeaksInKsDistributionValues             html  
    SiZer                                   html  
    SignifFeatureRegion                     html  
    TimeTreeFecher                          html  
    analysisEachCluster                     html  
    bootStrapPeaks                          html  
    calculateKsDistribution4wgd_multiple    html  
    checkFileExistence                      html  
    check_gff_from_file                     html  
    check_gff_input                         html  
    check_proteome_from_file                html  
    check_proteome_input                    html  
    cluster_synteny                         html  
    computing_depth                         html  
    computing_depth_paranome                html  
    create_ksrates_cmd                      html  
    create_ksrates_cmd_from_table           html  
    create_ksrates_configure_file_based_on_table
                                            html  
    create_ksrates_configure_file_v2        html  
    create_ksrates_expert_parameter_file    html  
    dfltBWrange                             html  
    dfltCounts                              html  
    downloadButton_custom                   html  
    drvkde                                  html  
    extractCluster                          html  
    extract_first_part                      html  
    find_peaks                              html  
    generateKsDistribution                  html  
    generate_ksd                            html  
    get_segments                            html  
    is.ksv                                  html  
    is.not.null                             html  
    is_fasta_cds                            html  
    ks_mclust_v2                            html  
    map_informal_name_to_latin_name         html  
    mix_logNormal_Ks                        html  
    modeFinder                              html  
    obtain_chromosome_length                html  
    obtain_chromosome_length_filter         html  
    obtain_coordiantes_for_anchorpoints     html  
    obtain_coordiantes_for_anchorpoints_ks
                                            html  
    obtain_coordiantes_for_segments         html  
    obtain_coordinates_for_segments_multiple
                                            html  
    obtain_mean_ks_for_each_multiplicon     html  
    parse_EMMIX                             html  
    parse_one_EMMIX                         html  
    read.wgd_ksd                            html  
    read_data_file                          html  
    relativeRate                            html  
    remove_inner_stop_codon_sequence        html  
    remove_old_dirs                         html  
    replace_informal_name_to_latin_name     html  
    resampleKsDistribution                  html  
    run_emmix_kmeas                         html  
    runshinyWGD                             html  
    symconv.ks                              html  
    symconv2D.ks                            html  
    symconv3D.ks                            html  
    symconv4D.ks                            html  
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (shinyWGD)