- using R version 4.4.2 Patched (2024-12-02 r87417)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc-14 (Debian 14.2.0-8) 14.2.0
GNU Fortran (Debian 14.2.0-8) 14.2.0
- running under: Debian GNU/Linux trixie/sid
- using session charset: UTF-8
- checking for file ‘shinySbm/DESCRIPTION’ ... OK
- this is package ‘shinySbm’ version ‘0.1.5’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘shinySbm’ can be installed ... OK
See the install log for details.
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [3s/4s] OK
- checking whether the package can be loaded with stated dependencies ... [3s/4s] OK
- checking whether the package can be unloaded cleanly ... [3s/3s] OK
- checking whether the namespace can be loaded with stated dependencies ... [3s/4s] OK
- checking whether the namespace can be unloaded cleanly ... [3s/4s] OK
- checking loading without being on the library search path ... [3s/4s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [24s/29s] OK
- checking Rd files ... [0s/1s] NOTE
checkRd: (-1) FungusTreeNetwork.Rd:15-21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FungusTreeNetwork.Rd:22-28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FungusTreeNetwork.Rd:33-34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FungusTreeNetwork.Rd:33: Lost braces; missing escapes or markup?
33 | \item{tree_tree}{Results of \code{estimateSimpleSBM} for {sbm}
| ^
checkRd: (-1) FungusTreeNetwork.Rd:35-36: Lost braces in \itemize; meant \describe ?
checkRd: (-1) FungusTreeNetwork.Rd:35: Lost braces; missing escapes or markup?
35 | \item{fungus_tree}{Results of \code{estimateBipartiteSBM} for {sbm}
| ^
checkRd: (-1) get_block.BipartiteSBM_fit.Rd:30: Lost braces; missing escapes or markup?
30 | A fct that return blocks attribution or probabilities for each nodes in a Sbm fit from the {sbm} package.
| ^
checkRd: (-1) get_block.Rd:36: Lost braces; missing escapes or markup?
36 | A fct that return blocks attribution or probabilities for each nodes in a Sbm fit from the {sbm} package.
| ^
checkRd: (-1) get_block.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) get_block.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) get_block.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) get_block.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) get_block.SimpleSBM_fit.Rd:30: Lost braces; missing escapes or markup?
30 | A fct that return blocks attribution or probabilities for each nodes in a Sbm fit from the {sbm} package.
| ^
checkRd: (-1) get_flextable.Rd:15: Lost braces; missing escapes or markup?
15 | \item{sbm}{an sbm model product of {sbm} estimation (simple or bipartite)}
| ^
checkRd: (-1) get_flextable.Rd:34: Lost braces in \itemize; meant \describe ?
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checkRd: (-1) get_flextable.Rd:45: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plotSbm.BipartiteSBM_fit.Rd:37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plotSbm.BipartiteSBM_fit.Rd:38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plotSbm.BipartiteSBM_fit.Rd:39: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plotSbm.BipartiteSBM_fit.Rd:40: Lost braces in \itemize; meant \describe ?
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checkRd: (-1) plotSbm.Rd:40: Lost braces in \itemize; meant \describe ?
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checkRd: (-1) plotSbm.SimpleSBM_fit.Rd:37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plotSbm.SimpleSBM_fit.Rd:38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plotSbm.SimpleSBM_fit.Rd:39: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plotSbm.SimpleSBM_fit.Rd:40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plotSbm.SimpleSBM_fit.Rd:41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plotSbm.SimpleSBM_fit.Rd:42: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plotSbm.SimpleSBM_fit.Rd:43: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plotSbm.matrix.Rd:37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plotSbm.matrix.Rd:38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plotSbm.matrix.Rd:39: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plotSbm.matrix.Rd:40: Lost braces in \itemize; meant \describe ?
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checkRd: (-1) plotSbm.matrix.Rd:42: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plotSbm.matrix.Rd:43: Lost braces in \itemize; meant \describe ?
checkRd: (-1) visSbm.BipartiteSBM_fit.Rd:38: Lost braces; missing escapes or markup?
38 | A fct that plot a {visNetwork} plot of a adjacency matrix or an Sbm fit from the {sbm} package.
| ^
checkRd: (-1) visSbm.BipartiteSBM_fit.Rd:38: Lost braces; missing escapes or markup?
38 | A fct that plot a {visNetwork} plot of a adjacency matrix or an Sbm fit from the {sbm} package.
| ^
checkRd: (-1) visSbm.BipartiteSBM_fit.Rd:25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) visSbm.BipartiteSBM_fit.Rd:26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) visSbm.BipartiteSBM_fit.Rd:43-44: Lost braces in \itemize; meant \describe ?
checkRd: (-1) visSbm.BipartiteSBM_fit.Rd:45: Lost braces in \itemize; meant \describe ?
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checkRd: (-1) visSbm.BipartiteSBM_fit.Rd:48: Lost braces in \itemize; meant \describe ?
checkRd: (-1) visSbm.BipartiteSBM_fit.Rd:49: Lost braces in \itemize; meant \describe ?
checkRd: (-1) visSbm.BipartiteSBM_fit.Rd:50: Lost braces in \itemize; meant \describe ?
checkRd: (-1) visSbm.BipartiteSBM_fit.Rd:51: Lost braces in \itemize; meant \describe ?
checkRd: (-1) visSbm.Rd:38: Lost braces; missing escapes or markup?
38 | A fct that plot a {visNetwork} plot of a adjacency matrix or an Sbm fit from the {sbm} package.
| ^
checkRd: (-1) visSbm.Rd:38: Lost braces; missing escapes or markup?
38 | A fct that plot a {visNetwork} plot of a adjacency matrix or an Sbm fit from the {sbm} package.
| ^
checkRd: (-1) visSbm.Rd:25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) visSbm.Rd:26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) visSbm.Rd:43-44: Lost braces in \itemize; meant \describe ?
checkRd: (-1) visSbm.Rd:45: Lost braces in \itemize; meant \describe ?
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checkRd: (-1) visSbm.Rd:47: Lost braces in \itemize; meant \describe ?
checkRd: (-1) visSbm.Rd:48: Lost braces in \itemize; meant \describe ?
checkRd: (-1) visSbm.Rd:49: Lost braces in \itemize; meant \describe ?
checkRd: (-1) visSbm.Rd:50: Lost braces in \itemize; meant \describe ?
checkRd: (-1) visSbm.Rd:51: Lost braces in \itemize; meant \describe ?
checkRd: (-1) visSbm.SimpleSBM_fit.Rd:38: Lost braces; missing escapes or markup?
38 | A fct that plot a {visNetwork} plot of a adjacency matrix or an Sbm fit from the {sbm} package.
| ^
checkRd: (-1) visSbm.SimpleSBM_fit.Rd:38: Lost braces; missing escapes or markup?
38 | A fct that plot a {visNetwork} plot of a adjacency matrix or an Sbm fit from the {sbm} package.
| ^
checkRd: (-1) visSbm.SimpleSBM_fit.Rd:25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) visSbm.SimpleSBM_fit.Rd:26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) visSbm.SimpleSBM_fit.Rd:43-44: Lost braces in \itemize; meant \describe ?
checkRd: (-1) visSbm.SimpleSBM_fit.Rd:45: Lost braces in \itemize; meant \describe ?
checkRd: (-1) visSbm.SimpleSBM_fit.Rd:46: Lost braces in \itemize; meant \describe ?
checkRd: (-1) visSbm.SimpleSBM_fit.Rd:47: Lost braces in \itemize; meant \describe ?
checkRd: (-1) visSbm.SimpleSBM_fit.Rd:48: Lost braces in \itemize; meant \describe ?
checkRd: (-1) visSbm.SimpleSBM_fit.Rd:49: Lost braces in \itemize; meant \describe ?
checkRd: (-1) visSbm.SimpleSBM_fit.Rd:50: Lost braces in \itemize; meant \describe ?
checkRd: (-1) visSbm.SimpleSBM_fit.Rd:51: Lost braces in \itemize; meant \describe ?
checkRd: (-1) visSbm.default.Rd:38: Lost braces; missing escapes or markup?
38 | A fct that plot a {visNetwork} plot of a adjacency matrix or an Sbm fit from the {sbm} package.
| ^
checkRd: (-1) visSbm.default.Rd:38: Lost braces; missing escapes or markup?
38 | A fct that plot a {visNetwork} plot of a adjacency matrix or an Sbm fit from the {sbm} package.
| ^
checkRd: (-1) visSbm.default.Rd:25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) visSbm.default.Rd:26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) visSbm.default.Rd:43-44: Lost braces in \itemize; meant \describe ?
checkRd: (-1) visSbm.default.Rd:45: Lost braces in \itemize; meant \describe ?
checkRd: (-1) visSbm.default.Rd:46: Lost braces in \itemize; meant \describe ?
checkRd: (-1) visSbm.default.Rd:47: Lost braces in \itemize; meant \describe ?
checkRd: (-1) visSbm.default.Rd:48: Lost braces in \itemize; meant \describe ?
checkRd: (-1) visSbm.default.Rd:49: Lost braces in \itemize; meant \describe ?
checkRd: (-1) visSbm.default.Rd:50: Lost braces in \itemize; meant \describe ?
checkRd: (-1) visSbm.default.Rd:51: Lost braces in \itemize; meant \describe ?
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... [3s/4s] OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [7s/10s] OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [8s/10s] OK
Running ‘spelling.R’ [0s/0s]
Running ‘testthat.R’ [7s/9s]
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [22s/25s] OK
- checking PDF version of manual ... [6s/7s] OK
- checking HTML version of manual ... [1s/2s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: 1 NOTE