Check results for 'shinyMixR'

using R version 4.5.2 Patched (2025-11-30 r89083)
using platform: x86_64-pc-linux-gnu
R was compiled by gcc-14 (Debian 14.3.0-10) 14.3.0 GNU Fortran (Debian 14.3.0-10) 14.3.0
running under: Debian GNU/Linux forky/sid
using session charset: UTF-8
checking for file ‘shinyMixR/DESCRIPTION’ ... OK
this is package ‘shinyMixR’ version ‘0.5.2’
package encoding: UTF-8
checking package namespace information ... OK
checking package dependencies ... OK
checking if this is a source package ... OK
checking if there is a namespace ... OK
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checking for sufficient/correct file permissions ... OK
checking whether package ‘shinyMixR’ can be installed ... OK See the install log for details.
checking package directory ... OK
checking for future file timestamps ... OK
checking ‘build’ directory ... OK
checking DESCRIPTION meta-information ... OK
checking top-level files ... OK
checking for left-over files ... OK
checking index information ... OK
checking package subdirectories ... OK
checking code files for non-ASCII characters ... OK
checking R files for syntax errors ... OK
checking whether the package can be loaded ... [3s/4s] OK
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checking whether the namespace can be loaded with stated dependencies ... [3s/4s] OK
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checking loading without being on the library search path ... [3s/4s] OK
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checking for unstated dependencies in examples ... OK
checking installed files from ‘inst/doc’ ... OK
checking files in ‘vignettes’ ... OK
checking examples ... [3s/4s] OK
checking for unstated dependencies in ‘tests’ ... OK
checking tests ... [9s/10s] ERROR Running ‘testthat.R’ [8s/10s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # see https://github.com/rstudio/shinytest2/issues/351 > options(chromote.timeout = 120) > > library(testthat) > library(shinyMixR) Loading required package: shiny Loading required package: ggplot2 > library(nlmixr2) ── Attaching packages ───────────────────────────────────────── nlmixr2 5.0.0 ── ✔ lotri 1.0.2 ✔ nlmixr2plot 5.0.0 ✔ nlmixr2data 2.0.9 ✔ rxode2 5.0.0 ✔ nlmixr2est 5.0.2 ✔ xpose.nlmixr2 0.4.1 ✔ nlmixr2extra 5.0.0 ── Optional Packages Loaded/Ignored ─────────────────────────── nlmixr2 5.0.0 ── ✔ shinyMixR ✖ nlmixr2lib ✔ xpose.nlmixr2 ✖ nlmixr2rpt ✖ babelmixr2 ✖ nonmem2rx ✖ ggPMX ✖ posologyr ✖ monolix2rx ── Conflicts ───────────────────────────────────────────── nlmixr2conflicts() ── ✖ rxode2::boxCox() masks nlmixr2est::boxCox() ✖ rxode2::yeoJohnson() masks nlmixr2est::yeoJohnson() > > test_check("shinyMixR") Error : package "qs" needed for this function to work Saving _problems/test-gof_plot-10.R Saving _problems/test-update_inits-9.R [ FAIL 2 | WARN 0 | SKIP 11 | PASS 23 ] ══ Skipped tests (11) ══════════════════════════════════════════════════════════ • On CRAN (11): 'test-module_dataexplore.R:3:3', 'test-module_metadata.R:3:3', 'test-module_report.R:4:3', 'test-module_run.R:3:3', 'test-module_script.R:3:3', 'test-module_settings.R:3:3', 'test-run_nmx.R:3:3', 'test-run_shinymixr.R:3:3', 'test-shinymixr-01-model-run1.R:8:3', 'test-shinymixr-02-parameter-table.R:6:3', 'test-shinymixr-03-create-newmodel.R:6:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-gof_plot.R:10:3'): gof_plot works as expected ────────────────── Error in `seq_len(nrow(.origData))`: argument must be coercible to non-negative integer Backtrace: ▆ 1. ├─base::suppressWarnings(gof_plot(res, ptype = "all", type = "xpose")) at test-gof_plot.R:10:3 2. │ └─base::withCallingHandlers(...) 3. └─shinyMixR::gof_plot(res, ptype = "all", type = "xpose") 4. └─xpose.nlmixr2::xpose_data_nlmixr2(dfrm) 5. ├─obj$dataMergeInner 6. └─nlmixr2est:::`$.nlmixr2FitData`(obj, "dataMergeInner") 7. ├─nlmixr2est::nmObjGetData(.lst) 8. └─nlmixr2est:::nmObjGetData.dataMergeInner(.lst) 9. └─nlmixr2est:::.dataMergeStub(.obj, preferFit = FALSE) ── Error ('test-update_inits.R:9:3'): update_inits works as expected ─────────── Error: package "qs" needed for this function to work Backtrace: ▆ 1. └─shinyMixR::update_inits(...) at test-update_inits.R:9:3 2. ├─ores$ui 3. └─nlmixr2est:::`$.nlmixr2FitData`(ores, "ui") 4. └─nlmixr2est:::`$.nlmixr2FitCore`(.env, arg, exact) 5. ├─nlmixr2est::nmObjGet(.lst) 6. └─nlmixr2est:::nmObjGet.ui(.lst) 7. ├─nlmixr2est:::.cloneEnv(rxode2::rxUiDecompress(get("ui", .env))) 8. └─rxode2::rxUiDecompress(get("ui", .env)) 9. └─rxode2::rxReq("qs") [ FAIL 2 | WARN 0 | SKIP 11 | PASS 23 ] Deleting unused snapshots: 'shinymixr-02-parameter-table/run2-model-001.json', 'shinymixr-02-parameter-table/run2-model-001_.png', 'shinymixr-02-parameter-table/run2-model-002.json', 'shinymixr-02-parameter-table/run2-model-002_.png', 'shinymixr-03-create-newmodel/run3-model-001.json', 'shinymixr-03-create-newmodel/run3-model-001_.png', 'shinymixr-03-create-newmodel/run3-model-002.json', and 'shinymixr-03-create-newmodel/run3-model-002_.png' Error: ! Test failures. Execution halted
checking for unstated dependencies in vignettes ... OK
checking package vignettes ... OK
checking re-building of vignette outputs ... [9s/11s] OK
checking PDF version of manual ... [5s/7s] OK
checking HTML version of manual ... [1s/2s] OK
checking for non-standard things in the check directory ... OK
DONE

Status: 1 ERROR