* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘shazam’ ...
** this is package ‘shazam’ version ‘1.3.0’
** package ‘shazam’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘shazam’
    finding HTML links ... done
    Baseline-class                          html  
    DensityThreshold-class                  html  
    GmmThreshold-class                      html  
    HH_S1F                                  html  
    HH_S5F                                  html  
    HKL_S1F                                 html  
    HKL_S5F                                 html  
    IMGT_SCHEMES                            html  
    MK_RS1NF                                html  
    MK_RS5NF                                html  
    MUTATION_SCHEMES                        html  
    MutabilityModel-class                   html  
    MutationDefinition-class                html  
    RegionDefinition-class                  html  
    TargetingMatrix-class                   html  
    TargetingModel-class                    html  
    U5N                                     html  
    calcBaseline                            html  
    calcExpectedMutations                   html  
    calcObservedMutations                   html  
    calcTargetingDistance                   html  
    calculateMutability                     html  
    collapseClones                          html  
    consensusSequence                       html  
    convertNumbering                        html  
    createBaseline                          html  
    createMutabilityMatrix                  html  
    createMutationDefinition                html  
    createRegionDefinition                  html  
    createSubstitutionMatrix                html  
    createTargetingMatrix                   html  
    createTargetingModel                    html  
    distToNearest                           html  
    editBaseline                            html  
    expectedMutations                       html  
    extendMutabilityMatrix                  html  
    extendSubstitutionMatrix                html  
    findThreshold                           html  
    groupBaseline                           html  
    makeAverage1merMut                      html  
    makeAverage1merSub                      html  
    makeDegenerate5merMut                   html  
    makeDegenerate5merSub                   html  
    makeGraphDf                             html  
    minNumMutationsTune                     html  
    minNumSeqMutationsTune                  html  
    observedMutations                       html  
    plotBaselineDensity                     html  
    plotBaselineSummary                     html  
    plotDensityThreshold                    html  
    plotGmmThreshold                        html  
    plotMutability                          html  
    plotSlideWindowTune                     html  
    plotTune                                html  
    setRegionBoundaries                     html  
    shazam-package                          html  
    shazam                                  html  
    shmulateSeq                             html  
    shmulateTree                            html  
    slideWindowDb                           html  
    slideWindowSeq                          html  
    slideWindowTune                         html  
    slideWindowTunePlot                     html  
    summarizeBaseline                       html  
    testBaseline                            html  
    writeTargetingDistance                  html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (shazam)