* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘shapr’ ...
** package ‘shapr’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (Debian 13.3.0-1) 13.3.0’
make[1]: Entering directory '/tmp/Rtmpgo8ZWF/R.INSTALL18224677d7def7/shapr/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c AICc.cpp -o AICc.o
AICc.cpp: In function ‘arma::mat hat_matrix_cpp(arma::mat, arma::mat, bool, double)’:
AICc.cpp:51:28: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
   51 |         for(icol = 0; icol < nrows; icol++)
      |                       ~~~~~^~~~~~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c distance.cpp -o distance.o
distance.cpp: In function ‘arma::cube mahalanobis_distance_cpp(Rcpp::List, arma::mat, arma::mat, arma::mat, bool)’:
distance.cpp:73:32: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
   73 |             for(icol = 0; icol < ntrain; icol++)
      |                           ~~~~~^~~~~~~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c features.cpp -o features.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c impute_data.cpp -o impute_data.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c weighted_matrix.cpp -o weighted_matrix.o
weighted_matrix.cpp: In function ‘arma::mat weight_matrix_cpp(Rcpp::List, int, int, Rcpp::NumericVector)’:
weighted_matrix.cpp:66:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
   66 |         for (int j = 0; j < Z.n_cols; j++) {
      |                         ~~^~~~~~~~~~
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o shapr.so AICc.o RcppExports.o distance.o features.o impute_data.o weighted_matrix.o -fopenmp -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/Rtmpgo8ZWF/R.INSTALL18224677d7def7/shapr/src'
make[1]: Entering directory '/tmp/Rtmpgo8ZWF/R.INSTALL18224677d7def7/shapr/src'
make[1]: Leaving directory '/tmp/Rtmpgo8ZWF/R.INSTALL18224677d7def7/shapr/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-shapr/00new/shapr/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘shapr’
    finding HTML links ... done
    aicc_full_cpp                           html  
    aicc_full_single_cpp                    html  
    apply_dummies                           html  
    check_features                          html  
    correction_matrix_cpp                   html  
    create_ctree                            html  
    explain                                 html  
    feature_combinations                    html  
    feature_matrix_cpp                      html  
    gaussian_transform                      html  
    gaussian_transform_separate             html  
    get_data_specs                          html  
    get_list_approaches                     html  
    get_model_specs                         html  
    get_supported_models                    html  
    hat_matrix_cpp                          html  
    inv_gaussian_transform                  html  
    mahalanobis_distance_cpp                html  
    make_dummies                            html  
    model_checker                           html  
    observation_impute                      html  
    observation_impute_cpp                  html  
    plot.shapr                              html  
    predict_model                           html  
    prediction                              html  
    prepare_data                            html  
    preprocess_data                         html  
    rss_cpp                                 html  
    sample_combinations                     html  
    sample_copula                           html  
    sample_ctree                            html  
    sample_gaussian                         html  
    shapley_weights                         html  
    shapr                                   html  
    update_data                             html  
    weight_matrix                           html  
    weight_matrix_cpp                       html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (shapr)