* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘shapr’ ...
** package ‘shapr’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (Debian 13.2.0-13) 13.2.0’
make[1]: Entering directory '/tmp/RtmpzTOVEn/R.INSTALL2ab8852613718e/shapr/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c AICc.cpp -o AICc.o
AICc.cpp: In function ‘arma::mat hat_matrix_cpp(arma::mat, arma::mat, bool, double)’:
AICc.cpp:51:28: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
51 | for(icol = 0; icol < nrows; icol++)
| ~~~~~^~~~~~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c distance.cpp -o distance.o
distance.cpp: In function ‘arma::cube mahalanobis_distance_cpp(Rcpp::List, arma::mat, arma::mat, arma::mat, bool)’:
distance.cpp:73:32: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
73 | for(icol = 0; icol < ntrain; icol++)
| ~~~~~^~~~~~~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c features.cpp -o features.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c impute_data.cpp -o impute_data.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c weighted_matrix.cpp -o weighted_matrix.o
weighted_matrix.cpp: In function ‘arma::mat weight_matrix_cpp(Rcpp::List, int, int, Rcpp::NumericVector)’:
weighted_matrix.cpp:66:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
66 | for (int j = 0; j < Z.n_cols; j++) {
| ~~^~~~~~~~~~
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o shapr.so AICc.o RcppExports.o distance.o features.o impute_data.o weighted_matrix.o -fopenmp -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpzTOVEn/R.INSTALL2ab8852613718e/shapr/src'
make[1]: Entering directory '/tmp/RtmpzTOVEn/R.INSTALL2ab8852613718e/shapr/src'
make[1]: Leaving directory '/tmp/RtmpzTOVEn/R.INSTALL2ab8852613718e/shapr/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-shapr/00new/shapr/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘shapr’
finding HTML links ... done
aicc_full_cpp html
aicc_full_single_cpp html
apply_dummies html
check_features html
correction_matrix_cpp html
create_ctree html
explain html
feature_combinations html
feature_matrix_cpp html
gaussian_transform html
gaussian_transform_separate html
get_data_specs html
get_list_approaches html
get_model_specs html
get_supported_models html
hat_matrix_cpp html
inv_gaussian_transform html
mahalanobis_distance_cpp html
make_dummies html
model_checker html
observation_impute html
observation_impute_cpp html
plot.shapr html
predict_model html
prediction html
prepare_data html
preprocess_data html
rss_cpp html
sample_combinations html
sample_copula html
sample_ctree html
sample_gaussian html
shapley_weights html
shapr html
update_data html
weight_matrix html
weight_matrix_cpp html
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (shapr)