* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘shapeR’ ...
** this is package ‘shapeR’ version ‘1.0-1’
** package ‘shapeR’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘shapeR’
    finding HTML links ... done
    FISH                                    html  
    cluster.plot                            html  
Rd warning: cluster.plot.Rd:48: missing link ‘vegan’
    detect.outline                          html  
Rd warning: detect.outline.Rd:41: missing link ‘pixmap’
    enrich.master.list                      html  
    estimate.outline.reconstruction         html  
    generateShapeCoefficients               html  
Rd warning: generateShapeCoefficients.Rd:12: missing link ‘wd’
Rd warning: generateShapeCoefficients.Rd:12: missing link ‘wavethresh’
Rd warning: generateShapeCoefficients.Rd:31: missing link ‘wavethresh’
    getFourier                              html  
    getMasterlist                           html  
    getMeasurements                         html  
    getStdFourier                           html  
    getStdMeasurements                      html  
    getStdWavelet                           html  
    getWavelet                              html  
    outline.reconstruction.plot             html  
    plotFourier                             html  
    plotFourierShape                        html  
    plotWavelet                             html  
    plotWaveletShape                        html  
Rd warning: plotWaveletShape.Rd:31: missing link ‘wavethresh’
    read.master.list                        html  
    remove.outline                          html  
    setFilter                               html  
    shape                                   html  
    shapeR                                  html  
    show                                    html  
    show.original.with.outline              html  
    smoothout                               html  
    stdCoefs                                html  
    write.image.with.outline                html  
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (shapeR)