• using R version 4.5.2 Patched (2026-01-31 r89374)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-14 (Debian 14.3.0-10) 14.3.0     GNU Fortran (Debian 14.3.0-10) 14.3.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8
• checking for file ‘sfo/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘sfo’ version ‘0.1.2’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘sfo’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [0s/0s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the package can be unloaded cleanly ... [0s/0s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
• checking loading without being on the library search path ... [0s/0s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [3s/4s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [2s/2s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [3s/3s] ERROR Running examples in ‘sfo-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: sankey_ly > ### Title: Sankey Plot with Plotly > ### Aliases: sankey_ly > > ### ** Examples > > data("sfo_passengers") > > library(dplyr) Attaching package: ‘dplyr’ The following objects are masked from ‘package:stats’:     filter, lag The following objects are masked from ‘package:base’:     intersect, setdiff, setequal, union > > d <- sfo_passengers %>% + filter(activity_period >= 202201 & activity_period < 202301) > > head(d)   activity_period operating_airline operating_airline_iata_code 1 202212 EVA Airways BR 2 202212 EVA Airways BR 3 202212 Emirates EK 4 202212 Emirates EK 5 202212 Flair Airlines, Ltd. F8 6 202212 Flair Airlines, Ltd. F8      published_airline published_airline_iata_code geo_summary geo_region 1 EVA Airways BR International Asia 2 EVA Airways BR International Asia 3 Emirates EK International Middle East 4 Emirates EK International Middle East 5 Flair Airlines, Ltd. F8 International Canada 6 Flair Airlines, Ltd. F8 International Canada   activity_type_code price_category_code terminal boarding_area 1 Deplaned Other International G 2 Enplaned Other International G 3 Deplaned Other International A 4 Enplaned Other International A 5 Deplaned Low Fare International A 6 Enplaned Low Fare International A   passenger_count 1 12405 2 15151 3 13131 4 14985 5 2543 6 2883 > > d %>% + filter(operating_airline == "United Airlines") %>% + mutate(terminal = ifelse(terminal == "International", "international", terminal)) %>% + group_by(operating_airline,activity_type_code, geo_summary, geo_region, terminal) %>% + summarise(total = sum(passenger_count), .groups = "drop") %>% + sankey_ly(cat_cols = c("operating_airline", "terminal","geo_summary", + "geo_region", "activity_type_code"), + num_col = "total", + title = "Distribution of United Airlines Passengers at SFO During 2022") Error: ! `summarise_()` was deprecated in dplyr 0.7.0 and is now defunct. ℹ Please use `summarise()` instead. Backtrace:      ▆   1. ├─... %>% ...   2. ├─sfo::sankey_ly(...)   3. │ ├─... %>% dplyr::bind_rows()   4. │ └─base::lapply(...)   5. │ └─sfo (local) FUN(X[[i]], ...)   6. │ └─... %>% ...   7. ├─dplyr::bind_rows(.)   8. │ └─rlang::list2(...)   9. ├─dplyr::left_join(...)  10. ├─dplyr::left_join(...)  11. └─dplyr::summarise_(...)  12. └─dplyr:::lazy_defunct("summarise", hint = FALSE)  13. └─lifecycle::deprecate_stop(...)  14. └─lifecycle:::deprecate_stop0(msg)  15. └─rlang::cnd_signal(...) Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [7s/11s] ERROR Error(s) in re-building vignettes:   ... --- re-building ‘v1_intro.Rmd’ using rmarkdown [WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead. --- finished re-building ‘v1_intro.Rmd’ --- re-building ‘v3_analyzing_landing.Rmd’ using rmarkdown Quitting from v3_analyzing_landing.Rmd:127-143 [unnamed-chunk-9] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/lifecycle_error_deprecated> Error: ! `summarise_()` was deprecated in dplyr 0.7.0 and is now defunct. ℹ Please use `summarise()` instead. --- Backtrace:      ▆   1. ├─... %>% ...   2. ├─sfo::sankey_ly(...)   3. │ ├─... %>% dplyr::bind_rows()   4. │ └─base::lapply(...)   5. │ └─sfo (local) FUN(X[[i]], ...)   6. │ └─... %>% ...   7. ├─dplyr::bind_rows(.)   8. │ └─rlang::list2(...)   9. ├─dplyr::left_join(...)  10. ├─dplyr::left_join(...)  11. └─dplyr::summarise_(...)  12. └─dplyr:::lazy_defunct("summarise", hint = FALSE)  13. └─lifecycle::deprecate_stop(...)  14. └─lifecycle:::deprecate_stop0(msg) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'v3_analyzing_landing.Rmd' failed with diagnostics: `summarise_()` was deprecated in dplyr 0.7.0 and is now defunct. ℹ Please use `summarise()` instead. --- failed re-building ‘v3_analyzing_landing.Rmd’ SUMMARY: processing the following file failed:   ‘v3_analyzing_landing.Rmd’ Error: Vignette re-building failed. Execution halted
• checking PDF version of manual ... [4s/5s] OK
• checking HTML version of manual ... [0s/0s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 2 ERRORs