* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘seroreconstruct’ ...
** this is package ‘seroreconstruct’ version ‘1.1.5’
** package ‘seroreconstruct’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-15 (Debian 15.2.0-16) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpBkX59U/R.INSTALL2f0fb145c90b2f/seroreconstruct/src'
g++-15 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-15 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c mcmc_function.cpp -o mcmc_function.o
g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o seroreconstruct.so RcppExports.o mcmc_function.o -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpBkX59U/R.INSTALL2f0fb145c90b2f/seroreconstruct/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpBkX59U/R.INSTALL2f0fb145c90b2f/seroreconstruct/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpBkX59U/R.INSTALL2f0fb145c90b2f/seroreconstruct/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-seroreconstruct/00new/seroreconstruct/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘seroreconstruct’
    finding HTML links ... done
    dot-effective_sample_size               html  
    dot-fit_single                          html  
    dot-get_param_names                     html  
    dot-mcmc_summary                        html  
    dot-new_seroreconstruct_fit             html  
    dot-new_seroreconstruct_joint           html  
    dot-new_seroreconstruct_multi           html  
    dot-plot_traces                         html  
    dot-prepare_inputs                      html  
    dot-validate_inputs                     html  
    dot-validate_simulation_params          html  
    flu_activity                            html  
    inputdata                               html  
    output_model_estimate                   html  
    para1                                   html  
    para2                                   html  
    plot_boosting                           html  
    plot_diagnostics                        html  
    plot_infection_prob                     html  
    plot_trajectory                         html  
    plot_waning                             html  
    print.seroreconstruct_fit               html  
    print.seroreconstruct_joint             html  
    print.seroreconstruct_multi             html  
    print.summary.seroreconstruct_fit       html  
    print.summary.seroreconstruct_joint     html  
    print.summary.seroreconstruct_multi     html  
    sero_reconstruct                        html  
    seroreconstruct-package                 html  
    simulate_data                           html  
    sub-sub-.seroreconstruct_multi          html  
    summary.seroreconstruct_fit             html  
    summary.seroreconstruct_joint           html  
    summary.seroreconstruct_multi           html  
    table_infections                        html  
    table_parameters                        html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (seroreconstruct)