* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘serocalculator’ ...
** this is package ‘serocalculator’ version ‘1.3.0’
** package ‘serocalculator’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-14 (Debian 14.3.0-10) 14.3.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpsPvp9M/R.INSTALL1fd946b499849/serocalculator/src'
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c serocalc.c -o serocalc.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c serocalculator-init.c -o serocalculator-init.o
gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o serocalculator.so serocalc.o serocalculator-init.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpsPvp9M/R.INSTALL1fd946b499849/serocalculator/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpsPvp9M/R.INSTALL1fd946b499849/serocalculator/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpsPvp9M/R.INSTALL1fd946b499849/serocalculator/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-serocalculator/00new/serocalculator/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Note: wrong number of arguments to 'floor' 
Note: wrong number of arguments to 'ceiling' 
** help
*** installing help indices
  converting help for package ‘serocalculator’
    finding HTML links ... done
    ab                                      html  
    as_curve_params                         html  
    as_noise_params                         html  
    as_pop_data                             html  
    autoplot.curve_params                   html  
    autoplot.pop_data                       html  
    autoplot.seroincidence                  html  
    autoplot.seroincidence.by               html  
    autoplot.summary.seroincidence.by       html  
    check_pop_data                          html  
    df.to.array                             html  
    dot-nll                                 html  
    est.incidence                           html  
    est.incidence.by                        html  
    example_noise_params_pk                 html  
    f_dev                                   html  
    f_dev0                                  html  
    fdev                                    html  
    graph.curve.params                      html  
    graph_loglik                            html  
    ldpar                                   html  
    llik                                    html  
    load_curve_params                       html  
    load_noise_params                       html  
    load_pop_data                           html  
    log_likelihood                          html  
    mk_baseline                             html  
    mkbaseline                              html  
    plot_curve_params_one_ab                html  
    print.seroincidence                     html  
    print.seroincidence.by                  html  
    print.summary.seroincidence.by          html  
    reexports                               html  
    row_longitudinal_parameter              html  
    sees_pop_data_pk_100                    html  
    sees_pop_data_pk_100_old_names          html  
    serocalculator                          html  
    serocalculator_example                  html  
    sim.cs                                  html  
    sim.cs.multi                            html  
    simcs.tinf                              html  
    simresp.tinf                            html  
    strata                                  html  
    strata.seroincidence.by                 html  
    stratify_data                           html  
    sub-.seroincidence.by                   html  
    summary.pop_data                        html  
    summary.seroincidence                   html  
    summary.seroincidence.by                html  
    typhoid_curves_nostrat_100              html  
    warn.missing.strata                     html  
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (serocalculator)