* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘secure’ ...
** package ‘secure’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’
using C++ compiler: ‘g++-13 (Debian 13.2.0-13) 13.2.0’
make[1]: Entering directory '/tmp/Rtmp97lNT8/R.INSTALL2b2d284e130467/secure/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include  -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include  -fpic  -g -O2 -Wall -pedantic -mtune=native   -c secure_SURR_fit.cpp -o secure_SURR_fit.o
secure_SURR_fit.cpp: In function ‘Rcpp::List secure_SURR_Rcpp_ortho(arma::mat, arma::mat, arma::mat, arma::mat, arma::vec, arma::vec, arma::vec, arma::vec, double, int, Rcpp::List)’:
secure_SURR_fit.cpp:543:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  543 |     if (svk > 0)
      |     ^~
secure_SURR_fit.cpp:561:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  561 |       if( (i>1) && ((nzcount(uk) > (p*spu)) || (nzcount(vk) > (q*spv)))  ) {break;}
      |       ^~
secure_SURR_fit.cpp: In function ‘Rcpp::List secure_SURR_miss_Rcpp(arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::vec, arma::vec, arma::vec, arma::vec, double, int, Rcpp::List)’:
secure_SURR_fit.cpp:734:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  734 |     if (svk > 0)
      |     ^~
secure_SURR_fit.cpp:752:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  752 |       if( (i>1) && ((nzcount(uk) > (p*spu)) || (nzcount(vk) > (q*spv)))  ) {break;}
      |       ^~
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c secure_init.c -o secure_init.o
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o secure.so RcppExports.o secure_SURR_fit.o secure_init.o -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/Rtmp97lNT8/R.INSTALL2b2d284e130467/secure/src'
make[1]: Entering directory '/tmp/Rtmp97lNT8/R.INSTALL2b2d284e130467/secure/src'
make[1]: Leaving directory '/tmp/Rtmp97lNT8/R.INSTALL2b2d284e130467/secure/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-secure/00new/secure/libs
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘secure’
    finding HTML links ... done
    CellCycle                               html  
    DLBCL                                   html  
    rrr.fit                                 html  
    secure.control                          html  
    secure.path                             html  
    secure.sim                              html  
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (secure)