• using R version 4.5.2 Patched (2025-11-09 r88993)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-14 (Debian 14.3.0-10) 14.3.0     GNU Fortran (Debian 14.3.0-10) 14.3.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8
• checking for file ‘sdbuildR/DESCRIPTION’ ... OK
• this is package ‘sdbuildR’ version ‘1.0.7’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘sdbuildR’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s/1s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/1s] OK
• checking whether the package can be unloaded cleanly ... [0s/1s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/1s] OK
• checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
• checking loading without being on the library search path ... [1s/1s] OK
• checking whether startup messages can be suppressed ... [1s/1s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [31s/38s] OK
• checking Rd files ... [1s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking R/sysdata.rda ... OK
• checking examples ... [39s/54s] OK Examples with CPU (user + system) or elapsed time > 5s        user system elapsed build 3.586 0.152 6.141
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [138s/163s] ERROR   Running ‘testthat.R’ [138s/163s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > # This file is part of the standard setup for testthat.   > # It is recommended that you do not modify it.   > #   > # Where should you do additional test configuration?   > # Learn more about the roles of various files in:   > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview   > # * https://testthat.r-lib.org/articles/special-files.html   >   > library(testthat)   > library(sdbuildR)      Attaching package: 'sdbuildR'      The following objects are masked from 'package:stats':          simulate, step      The following object is masked from 'package:utils':          debugger      >   > test_check("sdbuildR")   Potentially problematic:   * These variables have an equation of 0:   - Recovered   No problems detected!   Potentially problematic:   Problems:      Potentially problematic:   * Your model has no flows.   No problems detected!   Potentially problematic:   No problems detected!   Potentially problematic:   Problems:      Potentially problematic:   * Your model has no flows.   No problems detected!   Potentially problematic:   Problems:      Potentially problematic:   * Your model has no flows.      * These variables have an equation of 0:   - a   Problems:      Potentially problematic:   * Your model has no flows.      * These variables have an equation of 0:   - a   Your model contains:   * 3 Stocks: Susceptible, Infected, Recovered   * 2 Flows: Infection_Rate, Recovery_Rate   * 4 Constants: Beta, Total_Population, Effective_Contact_Rate, Delay   * 1 Auxiliaries: Lambda   * 0 Graphical Functions   * 0 Custom model units   * 0 Macros      Simulation time: 0.0 to 20.0 weeks (dt = 0.01)   Simulation settings: solver euler in R   This model uses an earlier version of Insight Maker (36), in which links were bi-directional by default. This may cause issues in translating the model. Please choose 'Clone Insight' in Insight Maker, and provide the URL to the updated model.   This model uses an earlier version of Insight Maker (36), in which links were bi-directional by default. This may cause issues in translating the model. Please choose 'Clone Insight' in Insight Maker, and provide the URL to the updated model.   This model uses an earlier version of Insight Maker (36), in which links were bi-directional by default. This may cause issues in translating the model. Please choose 'Clone Insight' in Insight Maker, and provide the URL to the updated model.   This model uses an earlier version of Insight Maker (36), in which links were bi-directional by default. This may cause issues in translating the model. Please choose 'Clone Insight' in Insight Maker, and provide the URL to the updated model.   Error in fallbackOnDefaultJuliaupPath() : Julia could not be found.   Julia needs to be installed and findable for the "JuliaConnectoR" package to work.   After installing Julia, the best way make Julia findable is to put the folder containing the Julia executable into the PATH environment variable.   For more information, see the help topic ?`Julia-Setup`.      Julia not found. Install Julia from https://julialang.org/install/   [ FAIL 4 | WARN 0 | SKIP 30 | PASS 915 ]      ══ Skipped tests (30) ══════════════════════════════════════════════════════════   • On CRAN (30): 'test-assemble_script_julia.R:4:3',     'test-assemble_script_julia.R:29:3', 'test-assemble_script_julia.R:53:3',     'test-assemble_script_julia.R:86:3', 'test-assemble_script_julia.R:102:3',     'test-assemble_script_julia.R:191:3', 'test-assemble_script_julia.R:213:3',     'test-assemble_script_julia.R:230:3', 'test-assemble_script_julia.R:253:3',     'test-assemble_script_julia.R:267:3', 'test-conv_julia.R:245:3',     'test-custom_func.R:114:3', 'test-custom_func.R:186:3',     'test-custom_func.R:306:3', 'test-custom_func.R:383:3',     'test-custom_func.R:442:3', 'test-ensemble.R:2:3', 'test-ensemble.R:141:3',     'test-ensemble.R:168:3', 'test-ensemble.R:278:3', 'test-ensemble.R:303:3',     'test-ensemble.R:342:3', 'test-ensemble.R:388:3',     'test-insightmaker_to_sfm.R:3:3', 'test-insightmaker_to_sfm.R:141:3',     'test-julia_vs_r.R:2:3', 'test-julia_vs_r.R:161:3', 'test-simulate.R:76:3',     'test-use_julia.R:11:3', 'test-visualise.R:2:3'      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Error ('test-build.R:675:3'): model_units() works ───────────────────────────   Error in `stringr::str_replace_all(eqn, pattern = pattern, replacement = reformat_scientific)`: Failed to apply `replacement` function.   i It must accept a character vector of any length.   Caused by error in `if (nchar(format(num, scientific = FALSE)) > digits_max) ...`:   ! the condition has length > 1   Backtrace:        ▆     1. ├─sdbuildR::model_units(xmile(), c("abc", "def"), "100 kilograms/40 sec") at test-build.R:675:3     2. │ └─base::vapply(eqn, clean_unit, character(1), regex_units, USE.NAMES = FALSE)     3. │ └─sdbuildR (local) FUN(X[[i]], ...)     4. │ └─sdbuildR:::scientific_notation(x_new, task = "add")     5. │ └─stringr::str_replace_all(eqn, pattern = pattern, replacement = reformat_scientific)     6. │ └─stringr:::str_transform_all(string, pattern, replacement)     7. │ ├─base::withCallingHandlers(...)     8. │ └─sdbuildR (local) replacement(old_flat)     9. └─base::.handleSimpleError(...)    10. └─stringr (local) h(simpleError(msg, call))    11. └─cli::cli_abort(...)    12. └─rlang::abort(...)   ── Error ('test-conv_julia.R:398:3'): clean units for Julia ────────────────────   Error in `stringr::str_replace_all(eqn, pattern = pattern, replacement = reformat_scientific)`: Failed to apply `replacement` function.   i It must accept a character vector of any length.   Caused by error in `if (nchar(format(num, scientific = FALSE)) > digits_max) ...`:   ! the condition has length > 1   Backtrace:        ▆     1. ├─sdbuildR:::clean_unit(x, regex_units) at test-conv_julia.R:398:3     2. │ └─sdbuildR:::scientific_notation(x_new, task = "add")     3. │ └─stringr::str_replace_all(eqn, pattern = pattern, replacement = reformat_scientific)     4. │ └─stringr:::str_transform_all(string, pattern, replacement)     5. │ ├─base::withCallingHandlers(...)     6. │ └─sdbuildR (local) replacement(old_flat)     7. └─base::.handleSimpleError(...)     8. └─stringr (local) h(simpleError(msg, call))     9. └─cli::cli_abort(...)    10. └─rlang::abort(...)   ── Error ('test-conv_julia.R:446:3'): clean_unit_in_u() works ──────────────────   Error in `stringr::str_replace_all(eqn, pattern = pattern, replacement = reformat_scientific)`: Failed to apply `replacement` function.   i It must accept a character vector of any length.   Caused by error in `if (nchar(format(num, scientific = FALSE)) > digits_max) ...`:   ! the condition has length > 1   Backtrace:        ▆     1. ├─sdbuildR:::clean_unit_in_u(...) at test-conv_julia.R:446:3     2. │ ├─base::paste0(...)     3. │ └─base::vapply(...)     4. │ └─sdbuildR (local) FUN(X[[i]], ...)     5. │ └─sdbuildR:::scientific_notation(x_new, task = "add")     6. │ └─stringr::str_replace_all(eqn, pattern = pattern, replacement = reformat_scientific)     7. │ └─stringr:::str_transform_all(string, pattern, replacement)     8. │ ├─base::withCallingHandlers(...)     9. │ └─sdbuildR (local) replacement(old_flat)    10. └─base::.handleSimpleError(...)    11. └─stringr (local) h(simpleError(msg, call))    12. └─cli::cli_abort(...)    13. └─rlang::abort(...)   ── Error ('test-conv_julia.R:723:3'): adding scientific notation ───────────────   Error in `stringr::str_replace_all(eqn, pattern = pattern, replacement = reformat_scientific)`: Failed to apply `replacement` function.   i It must accept a character vector of any length.   Caused by error in `if (nchar(format(num, scientific = FALSE)) > digits_max) ...`:   ! the condition has length > 1   Backtrace:        ▆     1. ├─testthat::expect_equal(...) at test-conv_julia.R:723:3     2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")     3. │ └─rlang::eval_bare(expr, quo_get_env(quo))     4. ├─sdbuildR:::scientific_notation("hiding 1e+23", task = "add")     5. │ └─stringr::str_replace_all(eqn, pattern = pattern, replacement = reformat_scientific)     6. │ └─stringr:::str_transform_all(string, pattern, replacement)     7. │ ├─base::withCallingHandlers(...)     8. │ └─sdbuildR (local) replacement(old_flat)     9. └─base::.handleSimpleError(...)    10. └─stringr (local) h(simpleError(msg, call))    11. └─cli::cli_abort(...)    12. └─rlang::abort(...)      [ FAIL 4 | WARN 0 | SKIP 30 | PASS 915 ]   Error: Test failures   Execution halted
• checking PDF version of manual ... [8s/9s] OK
• checking HTML version of manual ... [2s/3s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 1 ERROR