* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘sctransform’ ...
** this is package ‘sctransform’ version ‘0.4.2’
** package ‘sctransform’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.3.0-10) 14.3.0’
using C++17
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpXXocy7/R.INSTALL12e85a5c8e454d/sctransform/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c utils.cpp -o utils.o
utils.cpp: In function ‘Rcpp::NumericVector distribution_shift(Rcpp::NumericMatrix)’:
utils.cpp:309:15: warning: comparison of integer expressions of different signedness: ‘const unsigned int’ and ‘int’ [-Wsign-compare]
  309 |     if ((*it) < N) {
      |         ~~~~~~^~~
utils.cpp: In function ‘Rcpp::List qpois_reg(Rcpp::NumericMatrix, Rcpp::NumericVector, double, int, double, bool)’:
utils.cpp:360:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare]
  360 |   for(int i=0;i<pcols;++i){
      |               ~^~~~~~
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o sctransform.so RcppExports.o utils.o -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpXXocy7/R.INSTALL12e85a5c8e454d/sctransform/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpXXocy7/R.INSTALL12e85a5c8e454d/sctransform/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpXXocy7/R.INSTALL12e85a5c8e454d/sctransform/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-sctransform/00new/sctransform/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘sctransform’
    finding HTML links ... done
    compare_expression                      html  
    correct                                 html  
    correct_counts                          html  
    diff_mean_test                          html  
    diff_mean_test_conserved                html  
    generate                                html  
    get_model_var                           html  
    get_nz_median2                          html  
    get_residual_var                        html  
    get_residuals                           html  
    is_outlier                              html  
    make.sparse                             html  
    pbmc                                    html  
    plot_model                              html  
    plot_model_pars                         html  
    robust_scale                            html  
    robust_scale_binned                     html  
    row_gmean                               html  
    row_var                                 html  
    smooth_via_pca                          html  
    umify                                   html  
    umify_data                              html  
    vst                                     html  
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (sctransform)