* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘scalpel’ ...
** package ‘scalpel’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (Debian 13.2.0-23) 13.2.0’
make[1]: Entering directory '/tmp/RtmpW94OxS/R.INSTALLbec964d41b9f3/scalpel/src'
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c ConnectedComponentLabelling.c -o ConnectedComponentLabelling.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c scalpel_init.c -o scalpel_init.o
gcc-13 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o scalpel.so ConnectedComponentLabelling.o scalpel_init.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpW94OxS/R.INSTALLbec964d41b9f3/scalpel/src'
make[1]: Entering directory '/tmp/RtmpW94OxS/R.INSTALLbec964d41b9f3/scalpel/src'
make[1]: Leaving directory '/tmp/RtmpW94OxS/R.INSTALLbec964d41b9f3/scalpel/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-scalpel/00new/scalpel/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘scalpel’
    finding HTML links ... done
    getNeuronStatus                         html  
    getScalpel                              html  
    getScalpelStep0                         html  
    getScalpelStep1                         html  
    getScalpelStep2                         html  
    getScalpelStep3                         html  
    getY                                    html  
    plotBrightest                           html  
    plotCandidateFrame                      html  
    plotCluster                             html  
    plotFrame                               html  
    plotResults                             html  
    plotResultsAllLambda                    html  
    plotSpatial                             html  
    plotTemporal                            html  
    plotThresholdedFrame                    html  
    plotVideoVariance                       html  
    reviewNeurons                           html  
    reviewNeuronsInteractive                html  
    reviewNeuronsMoreFrames                 html  
    reviewOverlappingNeurons                html  
    scalpel-package                         html  
    scalpel                                 html  
    scalpelStep0                            html  
    scalpelStep1                            html  
    scalpelStep2                            html  
    scalpelStep3                            html  
    summary                                 html  
    updateNeurons                           html  
    updateNeuronsInteractive                html  
    updateThreshold                         html  
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (scalpel)