* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘scPairs’ ...
** this is package ‘scPairs’ version ‘0.1.8’
** package ‘scPairs’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘scPairs’
    finding HTML links ... done
    ABS_METRICS                             html  
    AssessGenePair                          html  
    CONFIDENCE_THRESHOLDS                   html  
    DEFAULT_PARAMS                          html  
    DEFAULT_WEIGHTS                         html  
    FindAllPairs                            html  
    FindGenePairs                           html  
    PlotBridgeNetwork                       html  
    PlotPairCrossType                       html  
    PlotPairDimplot                         html  
    PlotPairHeatmap                         html  
    PlotPairNetwork                         html  
    PlotPairScatter                         html  
    PlotPairSmoothed                        html  
    PlotPairSpatial                         html  
    PlotPairSummary                         html  
    PlotPairSynergy                         html  
    PlotPairViolin                          html  
    RAW_METRICS                             html  
    RESULT_COLUMNS                          html  
    SCORE_CONFIDENCE_QUANTILES              html  
    cross-celltype-metrics                  html  
    dot-align_spatial_data                  html  
    dot-assign_microenv_bins                html  
    dot-bicor                               html  
    dot-bicor_matrix                        html  
    dot-bridge_score                        html  
    dot-bridge_score_batch                  html  
    dot-build_heatmap_panel                 html  
    dot-build_knn_graph                     html  
    dot-build_panel_theme                   html  
    dot-build_prior_network                 html  
    dot-build_result                        html  
    dot-build_spatial_knn                   html  
    dot-cluster_cor                         html  
    dot-cluster_cor_batch                   html  
    dot-compute_bicor                       html  
    dot-compute_cluster_cor                 html  
    dot-compute_coexpression                html  
    dot-compute_cross_celltype              html  
    dot-compute_mi                          html  
    dot-compute_neighbourhood_score         html  
    dot-compute_pair_metrics                html  
    dot-compute_ratio_consistency           html  
    dot-compute_smoothed_cor                html  
    dot-compute_spatial_clq                 html  
    dot-compute_spatial_lee                 html  
    dot-cross_celltype                      html  
    dot-cross_celltype_batch                html  
    dot-cross_subtitle                      html  
    dot-extract_pair_vals                   html  
    dot-extract_pairs_df                    html  
    dot-get_expression_matrix               html  
    dot-get_go_gene_sets                    html  
    dot-get_kegg_gene_sets                  html  
    dot-get_spatial_coords                  html  
    dot-has_spatial                         html  
    dot-integrate_scores                    html  
    dot-msg                                 html  
    dot-mutual_info                         html  
    dot-mutual_info_batch                   html  
    dot-neighbourhood_coexpr                html  
    dot-neighbourhood_coexpr_batch          html  
    dot-neighbourhood_synergy               html  
    dot-neighbourhood_synergy_batch         html  
    dot-plot_bridge_network_enhanced        html  
    dot-prepare_expression_data             html  
    dot-prior_score                         html  
    dot-prior_score_batch                   html  
    dot-ratio_consistency                   html  
    dot-ratio_consistency_batch             html  
    dot-resolve_cluster_ids                 html  
    dot-row_vars                            html  
    dot-select_features                     html  
    dot-smooth_expression                   html  
    dot-smoothed_cor                        html  
    dot-smoothed_cor_batch                  html  
    dot-validate_binning_params             html  
    dot-validate_cor_method                 html  
    dot-validate_features                   html  
    dot-validate_min_cells_expressed        html  
    dot-validate_n_perm                     html  
    dot-validate_neighbourhood_params       html  
    dot-validate_percentage                 html  
    dot-validate_plot_inputs                html  
    dot-validate_seurat                     html  
    grapes-or-or-grapes                     html  
    neighbourhood-metrics                   html  
    plot-utils                              html  
    print.scPairs_gene_result               html  
    print.scPairs_pair_result               html  
    print.scPairs_result                    html  
    prior-knowledge                         html  
    schema                                  html  
    scpairs_testdata                        html  
    spatial-metrics                         html  
    validation                              html  
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (scPairs)