* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘scCustomize’ ...
** package ‘scCustomize’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘scCustomize’
finding HTML links ... done
Add_Alt_Feature_ID html
Add_CellBender_Diff html
Add_Cell_Complexity html
Add_Cell_QC_Metrics html
Add_Mito_Ribo html
Add_Pct_Diff html
Add_Sample_Meta html
Add_Top_Gene_Pct_Seurat html
Barcode_Plot html
Blank_Theme html
Case_Check html
CellBender_Diff_Plot html
CellBender_Feature_Diff html
Cell_Highlight_Plot html
Change_Delim_All html
Change_Delim_Prefix html
Change_Delim_Suffix html
CheckMatrix_scCustom html
Cluster_Highlight_Plot html
Cluster_Stats_All_Samples html
Clustered_DotPlot html
ColorBlind_Pal html
Convert_Assay html
Copy_From_GCP html
Copy_To_GCP html
Create_10X_H5 html
Create_CellBender_Merged_Seurat html
Create_Cluster_Annotation_File html
Dark2_Pal html
DimPlot_All_Samples html
DimPlot_LIGER html
DimPlot_scCustom html
DiscretePalette_scCustomize html
DotPlot_scCustom html
Extract_Modality html
Extract_Sample_Meta html
Extract_Top_Markers html
FeaturePlot_DualAssay html
FeaturePlot_scCustom html
FeatureScatter_scCustom html
Feature_Present html
Fetch_Meta html
Gene_Present html
Hue_Pal html
Iterate_Barcode_Rank_Plot html
Iterate_Cluster_Highlight_Plot html
Iterate_DimPlot_bySample html
Iterate_FeaturePlot_scCustom html
Iterate_Meta_Highlight_Plot html
Iterate_PC_Loading_Plots html
Iterate_Plot_Density_Custom html
Iterate_Plot_Density_Joint html
Iterate_VlnPlot_scCustom html
JCO_Four html
LIGER_Features html
Liger_to_Seurat html
MAD_Stats html
Median_Stats html
Merge_Seurat_List html
Merge_Sparse_Data_All html
Merge_Sparse_Multimodal_All html
Meta_Highlight_Plot html
Meta_Numeric html
Meta_Present html
Meta_Remove_Seurat html
Move_Legend html
NavyAndOrange html
PC_Plotting html
PalettePlot html
Percent_Expressing html
Plot_Cells_per_Sample html
Plot_Density_Custom html
Plot_Density_Joint_Only html
Plot_Median_Genes html
Plot_Median_Mito html
Plot_Median_Other html
Plot_Median_UMIs html
Pull_Cluster_Annotation html
Pull_Directory_List html
QC_Histogram html
QC_Plot_GenevsFeature html
QC_Plot_UMIvsFeature html
QC_Plot_UMIvsGene html
QC_Plots_Combined_Vln html
QC_Plots_Complexity html
QC_Plots_Feature html
QC_Plots_Genes html
QC_Plots_Mito html
QC_Plots_UMIs html
Read10X_GEO html
Read10X_Multi_Directory html
Read10X_h5_GEO html
Read10X_h5_Multi_Directory html
Read_CellBender_h5_Mat html
Read_CellBender_h5_Multi_Directory html
Read_CellBender_h5_Multi_File html
Read_GEO_Delim html
Read_Metrics_10X html
Reduction_Loading_Present html
Rename_Clusters html
Replace_Suffix html
Seq_QC_Plot_Alignment_Combined html
Seq_QC_Plot_Antisense html
Seq_QC_Plot_Basic_Combined html
Seq_QC_Plot_Exonic html
Seq_QC_Plot_Genes html
Seq_QC_Plot_Genome html
Seq_QC_Plot_Intergenic html
Seq_QC_Plot_Intronic html
Seq_QC_Plot_Number_Cells html
Seq_QC_Plot_Reads_in_Cells html
Seq_QC_Plot_Reads_per_Cell html
Seq_QC_Plot_Saturation html
Seq_QC_Plot_Total_Genes html
Seq_QC_Plot_Transcriptome html
Seq_QC_Plot_UMIs html
Setup_scRNAseq_Project html
Single_Color_Palette html
Split_Layers html
Split_Vector html
Stacked_VlnPlot html
Store_Misc_Info_Seurat html
Store_Palette_Seurat html
Top_Genes_Factor html
UnRotate_X html
Updated_HGNC_Symbols html
VariableFeaturePlot_scCustom html
Variable_Features_ALL_LIGER html
VlnPlot_scCustom html
as.LIGER html
as.Seurat html
as.anndata html
deprecated html
ensembl_mito_id html
ensembl_ribo_id html
ieg_gene_list html
msigdb_qc_gene_list html
plotFactors_scCustom html
reexports html
REDIRECT:topic Previous alias or file overwritten by alias: /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-scCustomize/00new/scCustomize/help/as.Seurat.html
scCustomize-package html
scCustomize_Palette html
theme_ggprism_mod html
viridis_shortcut html
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* creating tarball
packaged installation of ‘scCustomize’ as ‘scCustomize_2.1.2_R_x86_64-pc-linux-gnu.tar.gz’
* DONE (scCustomize)