* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘samurais’ ...
** package ‘samurais’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (Debian 13.2.0-23) 13.2.0’
using C++11
make[1]: Entering directory '/tmp/RtmpNG64Tr/R.INSTALL6af70304d38a4/samurais/src'
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c IRLS.cpp -o IRLS.o
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c costMatrix.cpp -o costMatrix.o
costMatrix.cpp: In function ‘arma::mat costMatrix(arma::colvec&, arma::mat&, double)’:
costMatrix.cpp:24:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘unsigned int’} [-Wsign-compare]
   24 |         for (int b = (a + Lmin); b < y.size(); b++)  {
      |                                  ~~^~~~~~~~~~
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c forwardsBackwards.cpp -o forwardsBackwards.o
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c multinomialLogit.cpp -o multinomialLogit.o
g++-13 -std=gnu++11 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o samurais.so IRLS.o RcppExports.o costMatrix.o forwardsBackwards.o multinomialLogit.o -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpNG64Tr/R.INSTALL6af70304d38a4/samurais/src'
make[1]: Entering directory '/tmp/RtmpNG64Tr/R.INSTALL6af70304d38a4/samurais/src'
make[1]: Leaving directory '/tmp/RtmpNG64Tr/R.INSTALL6af70304d38a4/samurais/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-samurais/00new/samurais/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘samurais’
    finding HTML links ... done
    MData-class                             html  
    ModelHMMR-class                         html  
    ModelMHMMR-class                        html  
    ModelMRHLP-class                        html  
    ModelPWR-class                          html  
    ModelRHLP-class                         html  
    ParamHMMR-class                         html  
    ParamMHMMR-class                        html  
    ParamMRHLP-class                        html  
    ParamPWR-class                          html  
    ParamRHLP-class                         html  
    StatHMMR-class                          html  
    StatMHMMR-class                         html  
    StatMRHLP-class                         html  
    StatPWR-class                           html  
    StatRHLP-class                          html  
    emHMMR                                  html  
    emMHMMR                                 html  
    emMRHLP                                 html  
    emRHLP                                  html  
    fitPWRFisher                            html  
    hmmProcess                              html  
    mkStochastic                            html  
    multivrealdataset                       html  
    multivtoydataset                        html  
    samurais-package                        html  
    selectHMMR                              html  
    selectMHMMR                             html  
    selectMRHLP                             html  
    selectRHLP                              html  
    univrealdataset                         html  
    univtoydataset                          html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (samurais)