* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘samr’ ...
** this is package ‘samr’ version ‘3.0’
** package ‘samr’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-14 (Debian 14.3.0-10) 14.3.0’
using Fortran compiler: ‘GNU Fortran (Debian 14.3.0-10) 14.3.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpJkOnNT/R.INSTALL1243c39fcebdb/samr/src'
gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c rankcol.f -o rankcol.o
rankcol.f:11:5:
11 | 23003 continue
| 1
Warning: Label 23003 at (1) defined but not used [-Wunused-label]
rankcol.f:13:5:
13 | 23001 continue
| 1
Warning: Label 23001 at (1) defined but not used [-Wunused-label]
rankcol.f:127:12:
127 | DATAP=DATA(INDEXP)
| 1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
rankcol.f:133:15:
133 | DATAP=DATA(INDEXP)
| 1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
rankcol.f:145:15:
145 | DATAP=DATA(INDEXP)
| 1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
rankcol.f:232:18:
232 | DATAP=DATA(INDEXP)
| 1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion]
rankcol.f:75:16:
75 | INTEGER M
| 1
Warning: Unused variable ‘datapntegerm’ declared at (1) [-Wunused-variable]
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c samr_init.c -o samr_init.o
gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o samr.so rankcol.o samr_init.o -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpJkOnNT/R.INSTALL1243c39fcebdb/samr/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpJkOnNT/R.INSTALL1243c39fcebdb/samr/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpJkOnNT/R.INSTALL1243c39fcebdb/samr/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-samr/00new/samr/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘samr’
finding HTML links ... done
SAM html
SAMseq html
runSAM html
samr html
samr.assess.samplesize html
samr.assess.samplesize.plot html
samr.compute.delta.table html
samr.compute.siggenes.table html
samr.estimate.depth html
samr.internal html
samr.missrate html
samr.norm.data html
samr.plot html
samr.pvalues.from.perms html
samr.tail.strength html
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (samr)