* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘rxode2parse’ ...
** package ‘rxode2parse’ successfully unpacked and MD5 sums checked
** using staged installation
--------[begin src/Makevars]--------
# -*- mode: makefile-gmake -*-
BH=/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include
RCPP=/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include
EG=/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include
SH=-isystem'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -isystem'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include/src'
CXX_STD = CXX17
################################################################################
## Package library flags.
PKG_LIBS = $(LAPACK_LIBS) $(BLAS_LIBS) $(FLIBS) $(SHLIB_OPENMP_CXXFLAGS) -L'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/lib/' -Wl,-rpath,'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/lib/' -ltbb -ltbbmalloc
# Release options
PKG_CFLAGS = -D_isrxode2parse_
PKG_CXXFLAGS = $(SHLIB_OPENMP_CXXFLAGS) -D_isrxode2parse_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"$(BH)" -isystem"$(EG)" $(SH) -isystem"$(RCPP)"
--------[end src/Makevars]--------
--------[begin R/RxODE_md5.R]--------
rxode2parse.md5 <- "c18ff1a2f151e2d8b856bbe21daf2be7"
--------[end R/RxODE_md5.R]--------
** libs
using C compiler: ‘gcc-13 (Debian 13.2.0-23) 13.2.0’
using C++ compiler: ‘g++-13 (Debian 13.2.0-23) 13.2.0’
using C++17
make[1]: Entering directory '/tmp/Rtmp9D7Xkp/R.INSTALL7c7bb770cb361/rxode2parse/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/dparser/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -D_isrxode2parse_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include" -isystem"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include" -isystem'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -isystem'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include/src' -isystem"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include" -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/dparser/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -D_isrxode2parse_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c codegen.c -o codegen.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/dparser/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -D_isrxode2parse_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include" -isystem"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include" -isystem'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -isystem'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include/src' -isystem"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include" -fpic -g -O2 -Wall -pedantic -mtune=native -c etTran.cpp -o etTran.o
etTran.cpp: In function ‘Rcpp::List etTransParse(Rcpp::List, Rcpp::List, bool, bool, bool, bool, Rcpp::Nullable<Rcpp::Vector<10, Rcpp::PreserveStorage> >, Rcpp::CharacterVector, bool, bool, bool)’:
etTran.cpp:2274:32: warning: comparison of integer expressions of different signedness: ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2274 | id.size() > (idxOut = idxOutput[iCur]) &&
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
etTran.cpp:2277:38: warning: comparison of integer expressions of different signedness: ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2277 | idxInput.size() > idxOut &&
| ~~~~~~~~~~~~~~~~^~~~~~~~
etTran.cpp:2285:39: warning: comparison of integer expressions of different signedness: ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2285 | idxOutput.size() < iCur+1 &&
| ~~~~~~~~~~~~~~~~~^~~~~~~~
etTran.cpp:2286:32: warning: comparison of integer expressions of different signedness: ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2286 | id.size() > (idxOut = idxOutput[iCur+1]) &&
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
etTran.cpp:2289:38: warning: comparison of integer expressions of different signedness: ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2289 | idxInput.size() > idxOut &&
| ~~~~~~~~~~~~~~~~^~~~~~~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/dparser/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -D_isrxode2parse_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include" -isystem"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include" -isystem'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -isystem'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include/src' -isystem"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include" -fpic -g -O2 -Wall -pedantic -mtune=native -c fast_factor.cpp -o fast_factor.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/dparser/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -D_isrxode2parse_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c genModelVars.c -o genModelVars.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/dparser/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -D_isrxode2parse_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c getOption.c -o getOption.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/dparser/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -D_isrxode2parse_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/dparser/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -D_isrxode2parse_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lincmt.c -o lincmt.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/dparser/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -D_isrxode2parse_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include" -isystem"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include" -isystem'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -isystem'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include/src' -isystem"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include" -fpic -g -O2 -Wall -pedantic -mtune=native -c lincmtB.cpp -o lincmtB.o
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/functor.hpp:13,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include/stan/math/rev/fun.hpp:201,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include/stan/math/rev.hpp:10,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include/stan/math.hpp:19,
from lincmtB.cpp:108:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/hcubature.hpp: In function ‘void stan::math::internal::combination(std::vector<int>&, const int&, const int&, const int&)’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/hcubature.hpp:73:29: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
73 | for (std::size_t i = 0; i < p - 1; i++) {
| ~~^~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/hcubature.hpp:79:16: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare]
79 | } while (k < x);
| ~~^~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/hcubature.hpp: In function ‘void stan::math::internal::combos(const int&, const double&, const int&, std::vector<std::vector<double, std::allocator<double> > >&)’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/hcubature.hpp:102:29: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
102 | for (std::size_t i = 1; i != choose_dimk + 1; i++) {
| ~~^~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/hcubature.hpp:105:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare]
105 | for (std::size_t j = 0; j != k; j++) {
| ~~^~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/hcubature.hpp: In function ‘void stan::math::internal::increment(std::vector<bool>&, const int&, const double&, const std::vector<int>&, std::vector<double, std::allocator<double> >&)’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/hcubature.hpp:126:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare]
126 | for (std::size_t j = 0; j != k; j++) {
| ~~^~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/hcubature.hpp:132:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<bool>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
132 | while ((first_zero < index.size()) && index[first_zero]) {
| ~~~~~~~~~~~^~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/hcubature.hpp:135:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<bool>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
135 | if (first_zero == index.size()) {
| ~~~~~~~~~~~^~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/hcubature.hpp:143:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
143 | for (std::size_t i = 0; i != first_zero + 1; i++) {
| ~~^~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/hcubature.hpp: In function ‘void stan::math::internal::signcombos(const int&, const double&, const int&, std::vector<std::vector<double, std::allocator<double> > >&)’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/hcubature.hpp:168:29: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
168 | for (std::size_t i = 1; i != choose_dimk + 1; i++) {
| ~~^~~~~~~~~~~~~~~~~~
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/prob/von_mises_lccdf.hpp:5,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/prob/von_mises_ccdf_log.hpp:4,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/prob.hpp:356,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim.hpp:16,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include/stan/math/rev.hpp:14:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/prob/von_mises_cdf.hpp: In function ‘stan::return_type_t<T_x, T_sigma, T_l> stan::math::von_mises_cdf(const T_x&, const T_mu&, const T_k&)’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/prob/von_mises_cdf.hpp:194: note: ‘-Wmisleading-indentation’ is disabled from this point onwards, since column-tracking was disabled due to the size of the code/headers
194 | if (cdf_n < 0.0)
|
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/prob/von_mises_cdf.hpp:194: note: adding ‘-flarge-source-files’ will allow for more column-tracking support, at the expense of compilation time and memory
In file included from lincmtB.cpp:187:
../inst/include/rxode2parseGetTime.h: In function ‘int handleInfusionStartRm(int*, int*, double*, int*, rx_solve*, rx_solving_options*, rx_solving_options_ind*)’:
../inst/include/rxode2parseGetTime.h:223: warning: unused variable ‘curEvid’ [-Wunused-variable]
223 | int curEvid = getEvid(ind, ind->idose[*endIdx+1]);
|
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/err/check_not_nan.hpp:5,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/err/check_2F1_converges.hpp:5,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/err.hpp:4,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include/stan/math/rev/core/profiling.hpp:9,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include/stan/math/rev/core.hpp:53,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include/stan/math/rev.hpp:8:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of ‘void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_finite<Eigen::Matrix<double, -1, 1> >(const char*, const char*, const Eigen::Matrix<double, -1, 1>&)::<lambda(double)>; T = Eigen::Matrix<double, -1, 1>; Indexings = {}; stan::require_eigen_t<T>* <anonymous> = 0; std::enable_if_t<((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime)>* <anonymous> = 0]’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/err/check_finite.hpp:29:20: required from ‘void stan::math::check_finite(const char*, const char*, const T_y&) [with T_y = Eigen::Matrix<double, -1, 1>]’
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/hypergeometric_pFq.hpp:35:15: required from ‘stan::return_type_t<T_x, T_sigma, T_l> stan::math::hypergeometric_pFq(const Ta&, const Tb&, const Tz&) [with Ta = Eigen::Matrix<double, -1, 1>; Tb = Eigen::Matrix<double, -1, 1>; Tz = double; stan::require_all_eigen_st<std::is_arithmetic, Ta, Tb>* <anonymous> = 0; stan::require_arithmetic_t<Tz>* <anonymous> = 0; stan::return_type_t<T_x, T_sigma, T_l> = double]’
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:125:28: required from ‘auto stan::math::hypergeometric_3F2(const Ta&, const Tb&, const Tz&) [with Ta = std::vector<double, std::allocator<double> >; Tb = std::vector<double, std::allocator<double> >; Tz = double; stan::require_all_vector_t<T_y, T_high>* <anonymous> = 0; stan::require_stan_scalar_t<T2>* <anonymous> = 0]’
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:148:28: required from ‘auto stan::math::hypergeometric_3F2(const std::initializer_list<_Tp>&, const std::initializer_list<_Value>&, const Tz&) [with Ta = double; Tb = double; Tz = double; stan::require_all_stan_scalar_t<Ta, Tb, Tz>* <anonymous> = 0]’
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include/stan/math/rev/fun/inv_inc_beta.hpp:77:37: required from here
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:153:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase<Eigen::Matrix<double, -1, 1> >::Index’ {aka ‘long int’} [-Wsign-compare]
153 | for (size_t i = 0; i < x.size(); i++) {
| ~~^~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of ‘void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_not_nan<Eigen::Matrix<double, -1, 1> >(const char*, const char*, const Eigen::Matrix<double, -1, 1>&)::<lambda(double)>; T = Eigen::Matrix<double, -1, 1>; Indexings = {}; stan::require_eigen_t<T>* <anonymous> = 0; std::enable_if_t<((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime)>* <anonymous> = 0]’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/err/check_not_nan.hpp:28:20: required from ‘void stan::math::check_not_nan(const char*, const char*, const T_y&) [with T_y = Eigen::Matrix<double, -1, 1>]’
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/hypergeometric_pFq.hpp:39:16: required from ‘stan::return_type_t<T_x, T_sigma, T_l> stan::math::hypergeometric_pFq(const Ta&, const Tb&, const Tz&) [with Ta = Eigen::Matrix<double, -1, 1>; Tb = Eigen::Matrix<double, -1, 1>; Tz = double; stan::require_all_eigen_st<std::is_arithmetic, Ta, Tb>* <anonymous> = 0; stan::require_arithmetic_t<Tz>* <anonymous> = 0; stan::return_type_t<T_x, T_sigma, T_l> = double]’
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:125:28: required from ‘auto stan::math::hypergeometric_3F2(const Ta&, const Tb&, const Tz&) [with Ta = std::vector<double, std::allocator<double> >; Tb = std::vector<double, std::allocator<double> >; Tz = double; stan::require_all_vector_t<T_y, T_high>* <anonymous> = 0; stan::require_stan_scalar_t<T2>* <anonymous> = 0]’
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:148:28: required from ‘auto stan::math::hypergeometric_3F2(const std::initializer_list<_Tp>&, const std::initializer_list<_Value>&, const Tz&) [with Ta = double; Tb = double; Tz = double; stan::require_all_stan_scalar_t<Ta, Tb, Tz>* <anonymous> = 0]’
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include/stan/math/rev/fun/inv_inc_beta.hpp:77:37: required from here
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:153:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase<Eigen::Matrix<double, -1, 1> >::Index’ {aka ‘long int’} [-Wsign-compare]
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of ‘void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_finite<Eigen::Matrix<double, 2, 1> >(const char*, const char*, const Eigen::Matrix<double, 2, 1>&)::<lambda(double)>; T = Eigen::Matrix<double, 2, 1>; Indexings = {}; stan::require_eigen_t<T>* <anonymous> = 0; std::enable_if_t<((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime)>* <anonymous> = 0]’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/err/check_finite.hpp:29:20: required from ‘void stan::math::check_finite(const char*, const char*, const T_y&) [with T_y = Eigen::Matrix<double, 2, 1>]’
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/hypergeometric_pFq.hpp:35:15: required from ‘stan::return_type_t<T_x, T_sigma, T_l> stan::math::hypergeometric_pFq(const Ta&, const Tb&, const Tz&) [with Ta = Eigen::Matrix<double, 2, 1>; Tb = Eigen::Matrix<double, 1, 1, 0, 1, 1>; Tz = double; stan::require_all_eigen_st<std::is_arithmetic, Ta, Tb>* <anonymous> = 0; stan::require_arithmetic_t<Tz>* <anonymous> = 0; stan::return_type_t<T_x, T_sigma, T_l> = double]’
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/hypergeometric_2F1.hpp:189:30: required from ‘stan::return_type_t<Ta1, Ta1, Tb, Tz> stan::math::hypergeometric_2F1(const Ta1&, const Ta2&, const Tb&, const Tz&) [with Ta1 = double; Ta2 = double; Tb = double; Tz = double; ScalarT = double; OptT = boost::optional<double>; stan::require_all_arithmetic_t<Ta1, Ta2, Tb, Tz>* <anonymous> = 0; stan::return_type_t<Ta1, Ta1, Tb, Tz> = double]’
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:190:39: required from ‘TupleT stan::math::internal::grad_2F1_impl(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool calc_a1 = true; bool calc_a2 = true; bool calc_b1 = true; bool calc_z = true; T1 = double; T2 = double; T3 = double; T_z = double; ScalarT = double; TupleT = std::tuple<double, double, double, double>]’
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:306:57: required from ‘auto stan::math::grad_2F1(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool ReturnSameT = true; T1 = double; T2 = double; T3 = double; T_z = double; stan::require_t<std::integral_constant<bool, __v> >* <anonymous> = 0]’
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/grad_inc_beta.hpp:37:25: required from here
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:153:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase<Eigen::Matrix<double, 2, 1> >::Index’ {aka ‘long int’} [-Wsign-compare]
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of ‘void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_finite<Eigen::Matrix<double, 1, 1, 0, 1, 1> >(const char*, const char*, const Eigen::Matrix<double, 1, 1, 0, 1, 1>&)::<lambda(double)>; T = Eigen::Matrix<double, 1, 1, 0, 1, 1>; Indexings = {}; stan::require_eigen_t<T>* <anonymous> = 0; std::enable_if_t<((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime)>* <anonymous> = 0]’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/err/check_finite.hpp:29:20: required from ‘void stan::math::check_finite(const char*, const char*, const T_y&) [with T_y = Eigen::Matrix<double, 1, 1, 0, 1, 1>]’
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/hypergeometric_pFq.hpp:36:15: required from ‘stan::return_type_t<T_x, T_sigma, T_l> stan::math::hypergeometric_pFq(const Ta&, const Tb&, const Tz&) [with Ta = Eigen::Matrix<double, 2, 1>; Tb = Eigen::Matrix<double, 1, 1, 0, 1, 1>; Tz = double; stan::require_all_eigen_st<std::is_arithmetic, Ta, Tb>* <anonymous> = 0; stan::require_arithmetic_t<Tz>* <anonymous> = 0; stan::return_type_t<T_x, T_sigma, T_l> = double]’
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/hypergeometric_2F1.hpp:189:30: required from ‘stan::return_type_t<Ta1, Ta1, Tb, Tz> stan::math::hypergeometric_2F1(const Ta1&, const Ta2&, const Tb&, const Tz&) [with Ta1 = double; Ta2 = double; Tb = double; Tz = double; ScalarT = double; OptT = boost::optional<double>; stan::require_all_arithmetic_t<Ta1, Ta2, Tb, Tz>* <anonymous> = 0; stan::return_type_t<Ta1, Ta1, Tb, Tz> = double]’
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:190:39: required from ‘TupleT stan::math::internal::grad_2F1_impl(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool calc_a1 = true; bool calc_a2 = true; bool calc_b1 = true; bool calc_z = true; T1 = double; T2 = double; T3 = double; T_z = double; ScalarT = double; TupleT = std::tuple<double, double, double, double>]’
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:306:57: required from ‘auto stan::math::grad_2F1(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool ReturnSameT = true; T1 = double; T2 = double; T3 = double; T_z = double; stan::require_t<std::integral_constant<bool, __v> >* <anonymous> = 0]’
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/grad_inc_beta.hpp:37:25: required from here
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:153:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase<Eigen::Matrix<double, 1, 1, 0, 1, 1> >::Index’ {aka ‘long int’} [-Wsign-compare]
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of ‘void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_not_nan<Eigen::Matrix<double, 2, 1> >(const char*, const char*, const Eigen::Matrix<double, 2, 1>&)::<lambda(double)>; T = Eigen::Matrix<double, 2, 1>; Indexings = {}; stan::require_eigen_t<T>* <anonymous> = 0; std::enable_if_t<((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime)>* <anonymous> = 0]’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/err/check_not_nan.hpp:28:20: required from ‘void stan::math::check_not_nan(const char*, const char*, const T_y&) [with T_y = Eigen::Matrix<double, 2, 1>]’
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/hypergeometric_pFq.hpp:39:16: required from ‘stan::return_type_t<T_x, T_sigma, T_l> stan::math::hypergeometric_pFq(const Ta&, const Tb&, const Tz&) [with Ta = Eigen::Matrix<double, 2, 1>; Tb = Eigen::Matrix<double, 1, 1, 0, 1, 1>; Tz = double; stan::require_all_eigen_st<std::is_arithmetic, Ta, Tb>* <anonymous> = 0; stan::require_arithmetic_t<Tz>* <anonymous> = 0; stan::return_type_t<T_x, T_sigma, T_l> = double]’
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/hypergeometric_2F1.hpp:189:30: required from ‘stan::return_type_t<Ta1, Ta1, Tb, Tz> stan::math::hypergeometric_2F1(const Ta1&, const Ta2&, const Tb&, const Tz&) [with Ta1 = double; Ta2 = double; Tb = double; Tz = double; ScalarT = double; OptT = boost::optional<double>; stan::require_all_arithmetic_t<Ta1, Ta2, Tb, Tz>* <anonymous> = 0; stan::return_type_t<Ta1, Ta1, Tb, Tz> = double]’
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:190:39: required from ‘TupleT stan::math::internal::grad_2F1_impl(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool calc_a1 = true; bool calc_a2 = true; bool calc_b1 = true; bool calc_z = true; T1 = double; T2 = double; T3 = double; T_z = double; ScalarT = double; TupleT = std::tuple<double, double, double, double>]’
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:306:57: required from ‘auto stan::math::grad_2F1(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool ReturnSameT = true; T1 = double; T2 = double; T3 = double; T_z = double; stan::require_t<std::integral_constant<bool, __v> >* <anonymous> = 0]’
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/grad_inc_beta.hpp:37:25: required from here
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:153:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase<Eigen::Matrix<double, 2, 1> >::Index’ {aka ‘long int’} [-Wsign-compare]
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of ‘void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_not_nan<Eigen::Matrix<double, 1, 1, 0, 1, 1> >(const char*, const char*, const Eigen::Matrix<double, 1, 1, 0, 1, 1>&)::<lambda(double)>; T = Eigen::Matrix<double, 1, 1, 0, 1, 1>; Indexings = {}; stan::require_eigen_t<T>* <anonymous> = 0; std::enable_if_t<((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime)>* <anonymous> = 0]’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/err/check_not_nan.hpp:28:20: required from ‘void stan::math::check_not_nan(const char*, const char*, const T_y&) [with T_y = Eigen::Matrix<double, 1, 1, 0, 1, 1>]’
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/hypergeometric_pFq.hpp:40:16: required from ‘stan::return_type_t<T_x, T_sigma, T_l> stan::math::hypergeometric_pFq(const Ta&, const Tb&, const Tz&) [with Ta = Eigen::Matrix<double, 2, 1>; Tb = Eigen::Matrix<double, 1, 1, 0, 1, 1>; Tz = double; stan::require_all_eigen_st<std::is_arithmetic, Ta, Tb>* <anonymous> = 0; stan::require_arithmetic_t<Tz>* <anonymous> = 0; stan::return_type_t<T_x, T_sigma, T_l> = double]’
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/hypergeometric_2F1.hpp:189:30: required from ‘stan::return_type_t<Ta1, Ta1, Tb, Tz> stan::math::hypergeometric_2F1(const Ta1&, const Ta2&, const Tb&, const Tz&) [with Ta1 = double; Ta2 = double; Tb = double; Tz = double; ScalarT = double; OptT = boost::optional<double>; stan::require_all_arithmetic_t<Ta1, Ta2, Tb, Tz>* <anonymous> = 0; stan::return_type_t<Ta1, Ta1, Tb, Tz> = double]’
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:190:39: required from ‘TupleT stan::math::internal::grad_2F1_impl(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool calc_a1 = true; bool calc_a2 = true; bool calc_b1 = true; bool calc_z = true; T1 = double; T2 = double; T3 = double; T_z = double; ScalarT = double; TupleT = std::tuple<double, double, double, double>]’
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:306:57: required from ‘auto stan::math::grad_2F1(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool ReturnSameT = true; T1 = double; T2 = double; T3 = double; T_z = double; stan::require_t<std::integral_constant<bool, __v> >* <anonymous> = 0]’
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/grad_inc_beta.hpp:37:25: required from here
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:153:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase<Eigen::Matrix<double, 1, 1, 0, 1, 1> >::Index’ {aka ‘long int’} [-Wsign-compare]
In function ‘double handleInfusionItem(int, rx_solve*, rx_solving_options*, rx_solving_options_ind*)’,
inlined from ‘double getTime__(int, rx_solving_options_ind*, int)’ at ../inst/include/rxode2parseGetTime.h:381:
../inst/include/rxode2parseGetTime.h:314: warning: ‘infBidx’ may be used uninitialized [-Wmaybe-uninitialized]
314 | if (infBidx == -1) return 0.0;
|
../inst/include/rxode2parseGetTime.h: In function ‘double getTime__(int, rx_solving_options_ind*, int)’:
../inst/include/rxode2parseGetTime.h:312: note: ‘infBidx’ was declared here
312 | int infBidx;
|
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include/stan/math/rev/core/operator_division.hpp:13,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include/stan/math/rev/core.hpp:29:
In constructor ‘stan::math::internal::multiply_vd_vari::multiply_vd_vari(stan::math::vari*, double)’,
inlined from ‘stan::math::var_value<T>& stan::math::var_value<T, typename std::enable_if<std::is_floating_point<typename std::decay<_Tp>::type>::value, void>::type>::operator*=(T) [with T = double]’ at /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include/stan/math/rev/core/operator_multiply_equal.hpp:24:9,
inlined from ‘stan::math::var_value<T>& stan::math::var_value<T, typename std::enable_if<std::is_floating_point<typename std::decay<_Tp>::type>::value, void>::type>::operator*=(T) [with T = double]’ at /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include/stan/math/rev/core/operator_multiply_equal.hpp:19:22,
inlined from ‘Eigen::Matrix<Type, -1, -1> stan::math::genericCmtInterface(Eigen::Matrix<Type, -1, 1>&, const Eigen::Matrix<double, -1, 1>&, double, int, int, int, int, int, int, rx_solving_options_ind*, rx_solve*, const Eigen::Matrix<double, -1, -1>&, const Eigen::Matrix<double, -1, -1>&) [with T = var_value<double>]’ at lincmtB.cpp:2517,
inlined from ‘Eigen::Matrix<Type, -1, 1> stan::math::linCmtFun::operator()(Eigen::Matrix<Type, -1, 1>&) const [with T = stan::math::var_value<double>]’ at lincmtB.cpp:2589,
inlined from ‘void stan::math::jacobian(const F&, const Eigen::Matrix<double, -1, 1>&, Eigen::Matrix<double, -1, 1>&, Eigen::Matrix<double, -1, -1>&) [with F = linCmtFun]’ at /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include/stan/math/rev/functor/jacobian.hpp:23:27:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include/stan/math/rev/core/operator_multiplication.hpp:34:75: warning: ‘amt’ may be used uninitialized [-Wmaybe-uninitialized]
34 | multiply_vd_vari(vari* avi, double b) : op_vd_vari(avi->val_ * b, avi, b) {}
| ^
lincmtB.cpp: In function ‘void stan::math::jacobian(const F&, const Eigen::Matrix<double, -1, 1>&, Eigen::Matrix<double, -1, 1>&, Eigen::Matrix<double, -1, -1>&) [with F = linCmtFun]’:
lincmtB.cpp:2266: note: ‘amt’ was declared here
2266 | double amt;
|
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/dparser/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -D_isrxode2parse_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c parseLinCmt.c -o parseLinCmt.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/dparser/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -D_isrxode2parse_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c print_node.c -o print_node.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/dparser/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -D_isrxode2parse_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include" -isystem"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include" -isystem'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -isystem'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include/src' -isystem"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include" -fpic -g -O2 -Wall -pedantic -mtune=native -c qs.cpp -o qs.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/dparser/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -D_isrxode2parse_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c sbuf.c -o sbuf.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/dparser/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -D_isrxode2parse_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c strncmpi.c -o strncmpi.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/dparser/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -D_isrxode2parse_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tran.c -o tran.o
In file included from parseFuns.h:131,
from tran.c:140:
parseFunsDosing.h: In function ‘handleFunctionTad’:
parseFunsDosing.h:82:61: warning: value computed is not used [-Wunused-value]
82 | handleFunctionTadEmptyCcode(tf, v2) ||
| ^~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/dparser/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -D_isrxode2parse_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include" -isystem"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include" -isystem'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -isystem'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include/src' -isystem"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include" -fpic -g -O2 -Wall -pedantic -mtune=native -c udf.cpp -o udf.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/dparser/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/StanHeaders/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -D_isrxode2parse_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c utilc.c -o utilc.o
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o rxode2parse.so RcppExports.o codegen.o etTran.o fast_factor.o genModelVars.o getOption.o init.o lincmt.o lincmtB.o parseLinCmt.o print_node.o qs.o sbuf.o strncmpi.o tran.o udf.o utilc.o -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -fopenmp -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/lib/ -Wl,-rpath,/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/lib/ -ltbb -ltbbmalloc -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/Rtmp9D7Xkp/R.INSTALL7c7bb770cb361/rxode2parse/src'
make[1]: Entering directory '/tmp/Rtmp9D7Xkp/R.INSTALL7c7bb770cb361/rxode2parse/src'
make[1]: Leaving directory '/tmp/Rtmp9D7Xkp/R.INSTALL7c7bb770cb361/rxode2parse/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-rxode2parse/00new/rxode2parse/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘rxode2parse’
finding HTML links ... done
dot-convertId html
dot-extraC html
dot-extraCnow html
dot-getLastIdLvl html
dot-getWh html
dot-linCmtSens html
dot-rxC html
dot-rxSEeqUsr html
dot-rxTransInfo html
dot-rxode2parseFunPtrs html
dot-symengineFs html
dot-toClassicEvid html
dot-udfCallFunArg html
dot-udfEnvReset html
dot-udfEnvSet html
dot-udfEnvSetUdf html
dot-udfExists html
dot-udfMd5Info html
etTransParse html
forderForceBase html
print.rxModelVars html
rxDerived html
rxFunParse html
rxParseSetSilentErr html
rxParseSuppressMsg html
rxSetIni0 html
rxode2parse html
rxode2parseAssignPackagesToLoad html
rxode2parseAssignPointerTranslation html
rxode2parseAssignTranslation html
rxode2parseD html
rxode2parseGetPointerAssignment html
rxode2parseGetTranslation html
rxode2parseMd5 html
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rxode2parse)