* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘ruv’ ...
** this is package ‘ruv’ version ‘0.9.7.1’
** package ‘ruv’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-14 (Debian 14.3.0-10) 14.3.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpsfRJYu/R.INSTALLee19820e7567a/ruv/src'
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c getsizeratios.c -o getsizeratios.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c increasingreg.c -o increasingreg.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c init.c -o init.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c sigmashrink.c -o sigmashrink.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c wipeout.c -o wipeout.o
wipeout.c: In function ‘wipeout’:
wipeout.c:20:14: warning: ‘maxindex’ may be used uninitialized [-Wmaybe-uninitialized]
   20 |     indicator[maxindex] = 0;
      |              ^
wipeout.c:5:17: note: ‘maxindex’ was declared here
    5 |   int start, i, maxindex;
      |                 ^~~~~~~~
gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o ruv.so getsizeratios.o increasingreg.o init.o sigmashrink.o wipeout.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpsfRJYu/R.INSTALLee19820e7567a/ruv/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpsfRJYu/R.INSTALLee19820e7567a/ruv/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpsfRJYu/R.INSTALLee19820e7567a/ruv/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-ruv/00new/ruv/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘ruv’
    finding HTML links ... done
    RUV2                                    html  
    RUV4                                    html  
    RUVI                                    html  
    RUVIII                                  html  
    RUVinv                                  html  
    RUVrinv                                 html  
    collapse.replicates                     html  
    design.matrix                           html  
    getK                                    html  
    get_empirical_variances                 html  
    google_search                           html  
    inputcheck1                             html  
    invvar                                  html  
    projectionplotvariables                 html  
    randinvvar                              html  
    replicate.matrix                        html  
    residop                                 html  
    ruv-package                             html  
    ruv_cancorplot                          html  
    ruv_ecdf                                html  
    ruv_hist                                html  
    ruv_projectionplot                      html  
    ruv_rankplot                            html  
    ruv_residuals                           html  
    ruv_rle                                 html  
    ruv_scree                               html  
    ruv_shiny                               html  
    ruv_summary                             html  
    ruv_svdgridplot                         html  
    ruv_svdplot                             html  
    ruv_varianceplot                        html  
    ruv_volcano                             html  
    sigmashrink                             html  
    variance_adjust                         html  
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ruv)