* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘rsofun’ ...
** this is package ‘rsofun’ version ‘5.1.0’
** package ‘rsofun’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-14 (Debian 14.3.0-10) 14.3.0’
using Fortran compiler: ‘GNU Fortran (Debian 14.3.0-10) 14.3.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp60N51Q/R.INSTALL1e4908538b27a1/rsofun/src'
gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c params_core.mod.f90 -o params_core.mod.o
gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c interface_in_biosphere_biomee.mod.f90 -o interface_in_biosphere_biomee.mod.o
gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c interface_out_biosphere_biomee.mod.f90 -o interface_out_biosphere_biomee.mod.o
gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c orgpool.mod.f90 -o orgpool.mod.o
gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c common_fluxes.mod.f90 -o common_fluxes.mod.o
gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c cohort_biomee.mod.f90 -o cohort_biomee.mod.o
gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c cohort_linked_list_biomee.mod.f90 -o cohort_linked_list_biomee.mod.o
gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c vegetation_tile_biomee.mod.f90 -o vegetation_tile_biomee.mod.o
gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c lu_tile_biomee.mod.f90 -o lu_tile_biomee.mod.o
gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c product_pools_biomee.mod.f90 -o product_pools_biomee.mod.o
gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c aggregated_tile_biomee.mod.f90 -o aggregated_tile_biomee.mod.o
gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c sofunutils.mod.f90 -o sofunutils.mod.o
gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c forcing_siterun_biomee.mod.f90 -o forcing_siterun_biomee.mod.o
gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c soil_biomee.mod.f90 -o soil_biomee.mod.o
gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c photosynth_pmodel.mod.f90 -o photosynth_pmodel.mod.o
gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c gpp_biomee.mod.f90 -o gpp_biomee.mod.o
gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c vegetation_processes_biomee.mod.f90 -o vegetation_processes_biomee.mod.o
gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c grid_siterun.mod.f90 -o grid_siterun.mod.o
gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c params_siml_pmodel.mod.f90 -o params_siml_pmodel.mod.o
gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c forcing_siterun_pmodel.mod.f90 -o forcing_siterun_pmodel.mod.o
gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c interface_biosphere_pmodel.mod.f90 -o interface_biosphere_pmodel.mod.o
gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c plant_pmodel.mod.f90 -o plant_pmodel.mod.o
gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c tile_pmodel.mod.f90 -o tile_pmodel.mod.o
gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c soiltemp_sitch.mod.f90 -o soiltemp_sitch.mod.o
gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c biosphere_biomee.mod.f90 -o biosphere_biomee.mod.o
gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c waterbal_splash.mod.f90 -o waterbal_splash.mod.o
gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c gpp_pmodel.mod.f90 -o gpp_pmodel.mod.o
gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c vegdynamics_pmodel.mod.f90 -o vegdynamics_pmodel.mod.o
gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c track_vegetation_d13c.mod.f90 -o track_vegetation_d13c.mod.o
gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c biosphere_pmodel.mod.f90 -o biosphere_pmodel.mod.o
gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c main_biomee.mod.f90 -o main_biomee.mod.o
gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c main_pmodel.mod.f90 -o main_pmodel.mod.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c wrappersc.c -o wrappersc.o
gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o rsofun.so aggregated_tile_biomee.mod.o biosphere_biomee.mod.o biosphere_pmodel.mod.o cohort_biomee.mod.o cohort_linked_list_biomee.mod.o common_fluxes.mod.o forcing_siterun_biomee.mod.o forcing_siterun_pmodel.mod.o gpp_biomee.mod.o gpp_pmodel.mod.o grid_siterun.mod.o interface_biosphere_pmodel.mod.o interface_in_biosphere_biomee.mod.o interface_out_biosphere_biomee.mod.o lu_tile_biomee.mod.o main_biomee.mod.o main_pmodel.mod.o orgpool.mod.o params_core.mod.o params_siml_pmodel.mod.o photosynth_pmodel.mod.o plant_pmodel.mod.o product_pools_biomee.mod.o sofunutils.mod.o soil_biomee.mod.o soiltemp_sitch.mod.o tile_pmodel.mod.o track_vegetation_d13c.mod.o vegdynamics_pmodel.mod.o vegetation_processes_biomee.mod.o vegetation_tile_biomee.mod.o waterbal_splash.mod.o wrappersc.o -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp60N51Q/R.INSTALL1e4908538b27a1/rsofun/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp60N51Q/R.INSTALL1e4908538b27a1/rsofun/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp60N51Q/R.INSTALL1e4908538b27a1/rsofun/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-rsofun/00new/rsofun/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘rsofun’
finding HTML links ... done
biomee_gs_leuning_drivers html
biomee_gs_leuning_output html
biomee_p_model_drivers html
biomee_p_model_luluc_drivers html
biomee_p_model_luluc_output html
biomee_p_model_output html
biomee_validation html
build_luc_matrix html
calib_sofun html
cost_likelihood_biomee html
cost_likelihood_pmodel html
cost_rmse_biomee html
cost_rmse_pmodel html
init_dates_dataframe html
p_model_drivers html
p_model_drivers_vcmax25 html
p_model_output html
p_model_output_vcmax25 html
p_model_validation html
p_model_validation_vcmax25 html
run_biomee_f_bysite html
run_pmodel_f_bysite html
run_pmodel_onestep_f_bysite html
runread_biomee_f html
runread_pmodel_f html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rsofun)