* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘rnaCrosslinkOO’ ...
** this is package ‘rnaCrosslinkOO’ version ‘0.1.4’
** package ‘rnaCrosslinkOO’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘rnaCrosslinkOO’
    finding HTML links ... done
    InputFiles                              html  
    InputToGRanges                          html  
    clusterGrangesList                      html  
    clusterGrangesList_set                  html  
    clusterNumbers                          html  
    clusterTableFolded                      html  
    clusterTableList                        html  
    clusterTableList_set                    html  
    clusterrnaCrosslink                     html  
    compareKnown                            html  
    compareKnownStructures                  html  
    featureInfo                             html  
    findBasePairsRNAcoFold2                 html  
    findBasePairsRNAfold                    html  
    findBasePairsRNAfold2                   html  
    foldrnaCrosslink                        html  
    getAdjacancyMat                         html  
    getClusterClusterShortRangeWhole        html  
    getData                                 html  
    getInteractions                         html  
    getMatrices                             html  
    getReverseInteractions                  html  
    group                                   html  
    makeExamplernaCrosslinkDataSet          html  
    matrixList                              html  
    matrixList_set                          html  
    plotClusterAgreement                    html  
    plotClusterAgreementHeat                html  
    plotCombinedMatrix                      html  
    plotComparisonArc                       html  
    plotEnsemblePCA                         html  
    plotInteractions                        html  
    plotInteractionsAverage                 html  
    plotMatrices                            html  
    plotMatricesAverage                     html  
    plotStructure                           html  
    printClustersFast                       html  
    readNumbers                             html  
    rnaCrosslinkDataSet                     html  
    rnaCrosslinkOO                          html  
    rnaCrosslinkQC                          html  
    rnaSize                                 html  
    rnas                                    html  
    sampleChimeras                          html  
    sampleNames                             html  
    sampleTable                             html  
    subsetInputList2                        html  
    swapInputs                              html  
    swapInputs2                             html  
    swapInputs3                             html  
    topInteracters                          html  
    topInteractions                         html  
    topTranscripts                          html  
    trimClusters                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rnaCrosslinkOO)