* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘rmatio’ ...
** package ‘rmatio’ successfully unpacked and MD5 sums checked
** using staged installation
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking inttypes.h... yes
checking stdlib.h... yes
checking stdint.h... yes
checking strings.h... yes
checking string.h... yes
checking sys/stat.h... yes
checking sys/types.h... yes
checking unistd.h...
checking for zlib... yes
checking size of char... 1
checking size of short... 2
checking size of double... 8
checking size of float... 4
checking size of int... 4
checking size of long... 8
checking size of long long... 8
checking size of size_t... 8
checking size of void *... 8
checking for mat_int8_t... int8_t
checking for mat_int16_t... int16_t
checking for mat_int32_t... int32_t
checking for mat_int64_t... int64_t
checking for mat_uint8_t... uint8_t
checking for mat_uint16_t... uint16_t
checking for mat_uint32_t... uint32_t
checking for mat_uint64_t... uint64_t
configure: creating ./config.status
config.status: creating src/Makevars
config.status: creating src/matio/config.h
config.status: src/matio/config.h is unchanged
** libs
using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’
make[1]: Entering directory '/tmp/RtmpX8117M/R.INSTALL2a7d9b797e5692/rmatio/src'
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c matio/endian.c -o matio/endian.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c matio/inflate.c -o matio/inflate.o
matio/inflate.c: In function ‘InflateSkip’:
matio/inflate.c:77:22: warning: storing the address of local variable ‘uncomp_buf’ in ‘*z.next_out’ [-Wdangling-pointer=]
77 | z->next_out = uncomp_buf;
| ~~~~~~~~~~~~~^~~~~~~~~~~~
matio/inflate.c:51:31: note: ‘uncomp_buf’ declared here
51 | mat_uint8_t comp_buf[512],uncomp_buf[512];
| ^~~~~~~~~~
matio/inflate.c:49:35: note: ‘z’ declared here
49 | InflateSkip(mat_t *mat, z_streamp z, int nbytes)
| ~~~~~~~~~~^
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c matio/mat4.c -o matio/mat4.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c matio/mat5.c -o matio/mat5.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c matio/mat.c -o matio/mat.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c matio/matvar_cell.c -o matio/matvar_cell.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c matio/matvar_struct.c -o matio/matvar_struct.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c matio/read_data.c -o matio/read_data.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rmatio.c -o rmatio.o
gcc-13 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o rmatio.so matio/endian.o matio/inflate.o matio/mat4.o matio/mat5.o matio/mat.o matio/matvar_cell.o matio/matvar_struct.o matio/read_data.o rmatio.o -lz -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpX8117M/R.INSTALL2a7d9b797e5692/rmatio/src'
make[1]: Entering directory '/tmp/RtmpX8117M/R.INSTALL2a7d9b797e5692/rmatio/src'
make[1]: Leaving directory '/tmp/RtmpX8117M/R.INSTALL2a7d9b797e5692/rmatio/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-rmatio/00new/rmatio/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘rmatio’
finding HTML links ... done
read.mat html
rmatio html
write.mat-methods html
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rmatio)