* using log directory ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/rjtools.Rcheck’ * using R version 4.5.1 Patched (2025-07-14 r88410) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc-14 (Debian 14.2.0-19) 14.2.0 GNU Fortran (Debian 14.2.0-19) 14.2.0 * running under: Debian GNU/Linux 13 (trixie) * using session charset: UTF-8 * checking for file ‘rjtools/DESCRIPTION’ ... OK * this is package ‘rjtools’ version ‘1.0.18’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘rjtools’ can be installed ... OK See 'https://www.r-project.org/nosvn/R.check/r-patched-linux-x86_64/rjtools-00install.html' for details. * checking package directory ... OK * checking for future file timestamps ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [1s/1s] OK * checking whether the package can be loaded with stated dependencies ... [1s/1s] OK * checking whether the package can be unloaded cleanly ... [1s/1s] OK * checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK * checking whether the namespace can be unloaded cleanly ... [1s/1s] OK * checking loading without being on the library search path ... [1s/1s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [10s/12s] OK * checking Rd files ... [0s/1s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... [0s/0s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [1s/1s] OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... [4s/8s] ERROR Running ‘testthat.R’ [4s/8s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(rjtools) > > test_check("rjtools") v SUCCESS: File and directory names are compliant. v SUCCESS: File and directory names are compliant. v SUCCESS: Article title formatted in title case. x ERROR: Article title not in title case! Suggest title: ToOoOlTiPs: An R Package for Customizable Tooltips in Interactive Graphics. v SUCCESS: Section titles formatted in sentence case. v SUCCESS: Possible motivation letter found: motivation-letter i NOTE: Motivation letter is not detected, if applicable v SUCCESS: No problematic file found x ERROR: Submission contains unnecessary files: RJtemplate.tex v SUCCESS: CRAN activities have been detected for package ggplot2 i NOTE: No CRAN activities detected for package nonexistent Vim: Warning: Output is not to a terminal Vim: Warning: Input is not from a terminal  An abstract of less than 150 words. draft: true author: - name: Quietest Quokka affiliation: University of Little Mates address: - Department of Letter Q - Somewhere, Australia url: https://www.britannica.com/animal/quokka orcid: 0000-1721-1511-1101 email: qquo@ulm.edu - name: Bounciest Bilby affiliation: - University of Little Mates - University of Aussie Animals address: - Department of Letter Q, Somewhere, Australia - Department of Marsupials, Somewhere, Australia1,1TopVim: Error reading input, exiting... Vim: Finished.  i Please use the folder 'data/', 'figures/', 'scripts/' and 'motivation-letter/' to organise additional data, figures, scripts, and motivation letter. ! Please maintain the default file/folder structure as it will be checked upon submission. i [Action required] Please align the file name between 'test.Rmd' and 'RJreferences.bib'. Success: your paper is ready to edit! [ FAIL 1 | WARN 0 | SKIP 0 | PASS 29 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-check.R:126:5'): available packages check works ──────────────── Error in `readRDS(con)`: error reading from connection Backtrace: ▆ 1. ├─rjtools (local) expect_SUCCESS(check_packages_available(article_path, ignore = "ToOoOlTiPs")) at test-check.R:126:5 2. │ └─testthat::expect_equal(c(expr), "SUCCESS") at test-check.R:68:19 3. │ └─testthat::quasi_label(enquo(object), label, arg = "object") 4. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 5. └─rjtools::check_packages_available(article_path, ignore = "ToOoOlTiPs") 6. └─rjtools:::allCRANpkgs() 7. └─tools::CRAN_package_db() 8. ├─base::as.data.frame(...) 9. └─tools:::read_CRAN_object(CRAN_baseurl_for_web_area(), "web/packages/packages.rds") 10. └─base::readRDS(con) [ FAIL 1 | WARN 0 | SKIP 0 | PASS 29 ] Error: Test failures Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [9s/15s] OK * checking PDF version of manual ... [4s/6s] OK * checking HTML version of manual ... [0s/1s] OK * checking for non-standard things in the check directory ... OK * DONE Status: 1 ERROR