* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘ripserr’ ...
** this is package ‘ripserr’ version ‘1.0.0’
** package ‘ripserr’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpn4rrVr/R.INSTALL2c743b667ba3e9/ripserr/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c cubical_2dim.cpp -o cubical_2dim.o
cubical_2dim.cpp: In member function ‘void ComputePairs2::compute_pairs_main()’:
cubical_2dim.cpp:528:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
  528 |     for (int i = 0; i < ctl_size; ++i)
      |                     ~~^~~~~~~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c cubical_3dim.cpp -o cubical_3dim.o
cubical_3dim.cpp: In constructor ‘ColumnsToReduce3::ColumnsToReduce3(DenseCubicalGrids3*)’:
cubical_3dim.cpp:394:7: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  394 |       for (int y = ay; y > 0; --y)
      |       ^~~
cubical_3dim.cpp:401:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  401 |         sort(columns_to_reduce.begin(), columns_to_reduce.end(), BirthdayIndex3Comparator());
      |         ^~~~
cubical_3dim.cpp: In member function ‘void ComputePairs3::compute_pairs_main()’:
cubical_3dim.cpp:804:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
  804 |     for(int i = 0; i < ctl_size; ++i) {
      |                    ~~^~~~~~~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c cubical_4dim.cpp -o cubical_4dim.o
cubical_4dim.cpp: In member function ‘void ComputePairs4::compute_pairs_main()’:
cubical_4dim.cpp:1045:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
 1045 |     for(int i = 0; i < ctl_size; ++i) {
      |                    ~~^~~~~~~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c ripser.cpp -o ripser.o
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o ripserr.so RcppExports.o cubical_2dim.o cubical_3dim.o cubical_4dim.o ripser.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpn4rrVr/R.INSTALL2c743b667ba3e9/ripserr/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpn4rrVr/R.INSTALL2c743b667ba3e9/ripserr/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpn4rrVr/R.INSTALL2c743b667ba3e9/ripserr/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-ripserr/00new/ripserr/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘ripserr’
    finding HTML links ... done
    PHom                                    html  
    aegypti                                 html  
    as.PHom                                 html  
    blackholes                              html  
    case_predictors                         html  
    cubical                                 html  
    head.PHom                               html  
    is.PHom                                 html  
    print.PHom                              html  
    ripserr                                 html  
    tail.PHom                               html  
    vietoris_rips                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ripserr)