* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘ribiosIO’ ...
** this is package ‘ribiosIO’ version ‘1.1.0’
** package ‘ribiosIO’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-14 (Debian 14.3.0-12) 14.3.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpDjYbBm/R.INSTALL2701f91be949b8/ribiosIO/src'
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../inst/include -I../inst/include/bios_headers -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c array.c -o array.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../inst/include -I../inst/include/bios_headers -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c format.c -o format.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../inst/include -I../inst/include/bios_headers -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c hlrmisc.c -o hlrmisc.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../inst/include -I../inst/include/bios_headers -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../inst/include -I../inst/include/bios_headers -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c linestream.c -o linestream.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../inst/include -I../inst/include/bios_headers -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c log.c -o log.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../inst/include -I../inst/include/bios_headers -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c plabla.c -o plabla.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../inst/include -I../inst/include/bios_headers -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c read_biokit_exprs.c -o read_biokit_exprs.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../inst/include -I../inst/include/bios_headers -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c read_chip.c -o read_chip.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../inst/include -I../inst/include/bios_headers -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c read_gct.c -o read_gct.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../inst/include -I../inst/include/bios_headers -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c read_gmt.c -o read_gmt.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../inst/include -I../inst/include/bios_headers -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c write_gmt.c -o write_gmt.o
gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o ribiosIO.so array.o format.o hlrmisc.o init.o linestream.o log.o plabla.o read_biokit_exprs.o read_chip.o read_gct.o read_gmt.o write_gmt.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpDjYbBm/R.INSTALL2701f91be949b8/ribiosIO/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpDjYbBm/R.INSTALL2701f91be949b8/ribiosIO/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpDjYbBm/R.INSTALL2701f91be949b8/ribiosIO/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-ribiosIO/00new/ribiosIO/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘ribiosIO’
finding HTML links ... done
GctMatrix html
as.matrix.GctMatrix html
as_numeric_matrix html
cbindGct html
find_ampliseq html
gctDesc html
gctMatrix2longdf html
getDataDir html
iofile html
isGctFile html
is_factor_file html
loadFile html
loadObject html
loadObjectInEnv html
loadRDS html
longdf2gctMatrix html
optional_suppress_warning html
print.GctMatrix html
readMatrix html
readTable html
read_ampliseq_bedcovgct html
read_annotated_ampliseq_amplicons html
read_bed html
read_biokit_exprs html
read_chip html
read_david html
read_exprs_matrix html
read_factor html
read_fasta html
read_gct_matrix html
read_gmt_dataframe html
read_gmt_list html
read_illumina_sampleSheet html
read_pheno html
read_raw_ampliseq_amplicons html
read_trimmed_lines html
ribiosIO-package html
setDataDir html
strList2DataFrame html
sub-.GctMatrix html
write.tableList html
writeMatrix html
writeMatrix.tableList html
writeStrList html
write_annotated_ampliseq_amplicons html
write_factor html
write_gct html
write_gmt html
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ribiosIO)