* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘rgph’ ...
** this is package ‘rgph’ version ‘0.1.0’
** package ‘rgph’ successfully unpacked and MD5 sums checked
** using staged installation
==> Compiling Java sources for ReebGraphPairing
./configure: 17: R_HOME: not found
./configure: 18: R_HOME: not found
Using JAVAC: /usr/bin/javac
Classpath: inst/java/classes:inst/java/lib/JOCL-0.1.9.jar
java/src/usf/saav/topology/merge/PAugmentedMergeTree.java:703: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
			super( new Integer(_v*sf.getWidth()+_u) );
			       ^
1 warning
==> Java build complete -> inst/java/ReebGraphPairing.jar
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘rgph’
    finding HTML links ... done
    as_reeb_graph                           html  
    reeb_graph                              html  
    reeb_graph_examples                     html  
    reeb_graph_pairs                        html  
    reeb_graph_persistence                  html  
    rgph                                    html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rgph)