* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘retistruct’ ...
** this is package ‘retistruct’ version ‘0.8.1’
** package ‘retistruct’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpyDZNGe/R.INSTALL2fd04e3893a198/retistruct/src'
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c bary2sph.c -o bary2sph.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c energy.c -o energy.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c retistruct_init.c -o retistruct_init.o
gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o retistruct.so bary2sph.o energy.o retistruct_init.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpyDZNGe/R.INSTALL2fd04e3893a198/retistruct/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpyDZNGe/R.INSTALL2fd04e3893a198/retistruct/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpyDZNGe/R.INSTALL2fd04e3893a198/retistruct/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-retistruct/00new/retistruct/libs
** R
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘retistruct’
    finding HTML links ... done
    AnnotatedOutline                        html  
    CountSet                                html  
    E                                       html  
    Ecart                                   html  
    Fcart                                   html  
    FeatureSet                              html  
    FeatureSetCommon                        html  
    Fragment                                html  
    LandmarkSet                             html  
    Outline                                 html  
    OutlineCommon                           html  
    PathOutline                             html  
    PointSet                                html  
    R6_to_list                              html  
    Rcart                                   html  
    ReconstructedCountSet                   html  
    ReconstructedFeatureSet                 html  
    ReconstructedLandmarkSet                html  
    ReconstructedOutline                    html  
    ReconstructedPointSet                   html  
    RetinalOutline                          html  
    RetinalReconstructedOutline             html  
    StitchedOutline                         html  
    TriangulatedFragment                    html  
    TriangulatedOutline                     html  
    azel.to.sphere.colatitude               html  
    azimuthal.conformal                     html  
    azimuthal.equalarea                     html  
    azimuthal.equidistant                   html  
    bary.to.sphere.cart                     html  
    central.angle                           html  
    checkDatadir                            html  
    circle                                  html  
    compute.intersections.sphere            html  
    compute.kernel.estimate                 html  
    create.polar.cart.grid                  html  
    csv.read.dataset                        html  
    dE                                      html  
    depthplot3D                             html  
    directories                             html  
    f                                       html  
    fire                                    html  
    flatplot.AnnotatedOutline               html  
    flatplot.Outline                        html  
    flatplot                                html  
    flatplot.ReconstructedOutline           html  
    flatplot.StitchedOutline                html  
    flatplot.TriangulatedOutline            html  
    flipped.triangles                       html  
    flipped.triangles.cart                  html  
    fp                                      html  
    identity.transform                      html  
    idt.read.dataset                        html  
    ijroi.read.dataset                      html  
    ijroimulti.read.dataset                 html  
    interpolate.image                       html  
    invert.sphere                           html  
    invert.sphere.to.hemisphere             html  
    karcher.mean.sphere                     html  
    kde.L                                   html  
    kde.compute.concentration               html  
    kde.fhat                                html  
    kde.fhat.cart                           html  
    kr.compute.concentration                html  
    kr.sscv                                 html  
    kr.yhat                                 html  
    kr.yhat.cart                            html  
    line.line.intersection                  html  
    list.datasets                           html  
    list_to_R6                              html  
    lvsLplot                                html  
    morph.dataset.to.parabola               html  
    name.list                               html  
    normalise.angle                         html  
    orthographic                            html  
    panlabel                                html  
    parabola.arclength                      html  
    parabola.invarclength                   html  
    parse.dependencies                      html  
    polar.cart.to.sphere.spherical          html  
    polartext                               html  
    projection                              html  
    projection.ReconstructedOutline         html  
    projection.RetinalReconstructedOutline
                                            html  
    read.datacounts                         html  
    read.datapoints                         html  
    remove.identical.consecutive.rows       html  
    remove.intersections                    html  
    report                                  html  
    retistruct                              html  
    retistruct.batch                        html  
    retistruct.batch.export.matlab          html  
    retistruct.batch.figures                html  
    retistruct.batch.get.titrations         html  
    retistruct.batch.plot.titrations        html  
    retistruct.batch.summary                html  
    retistruct.check.markup                 html  
    retistruct.cli                          html  
    retistruct.cli.figure                   html  
    retistruct.cli.process                  html  
    retistruct.export.matlab                html  
    retistruct.read.dataset                 html  
    retistruct.read.markup                  html  
    retistruct.read.recdata                 html  
    retistruct.reconstruct                  html  
    retistruct.save.markup                  html  
    retistruct.save.recdata                 html  
    rotate.axis                             html  
    server                                  html  
    simplifyFragment                        html  
    simplifyOutline                         html  
    sinusoidal                              html  
    sphere.cart.to.sphere.dualwedge         html  
    sphere.cart.to.sphere.spherical         html  
    sphere.cart.to.sphere.wedge             html  
    sphere.spherical.to.polar.cart          html  
    sphere.spherical.to.sphere.cart         html  
    sphere.tri.area                         html  
    sphere.wedge.to.sphere.cart             html  
    spherical.to.polar.area                 html  
    sphericalplot                           html  
    sphericalplot.ReconstructedOutline      html  
    strain.colours                          html  
    stretchMesh                             html  
    tri.area                                html  
    tri.area.signed                         html  
    ui                                      html  
    vecnorm                                 html  
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (retistruct)