* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’ * installing *source* package ‘retistruct’ ... ** this is package ‘retistruct’ version ‘0.8.1’ ** package ‘retistruct’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpyDZNGe/R.INSTALL2fd04e3893a198/retistruct/src' gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c bary2sph.c -o bary2sph.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c energy.c -o energy.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c retistruct_init.c -o retistruct_init.o gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o retistruct.so bary2sph.o energy.o retistruct_init.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpyDZNGe/R.INSTALL2fd04e3893a198/retistruct/src' make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpyDZNGe/R.INSTALL2fd04e3893a198/retistruct/src' make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpyDZNGe/R.INSTALL2fd04e3893a198/retistruct/src' installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-retistruct/00new/retistruct/libs ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘retistruct’ finding HTML links ... done AnnotatedOutline html CountSet html E html Ecart html Fcart html FeatureSet html FeatureSetCommon html Fragment html LandmarkSet html Outline html OutlineCommon html PathOutline html PointSet html R6_to_list html Rcart html ReconstructedCountSet html ReconstructedFeatureSet html ReconstructedLandmarkSet html ReconstructedOutline html ReconstructedPointSet html RetinalOutline html RetinalReconstructedOutline html StitchedOutline html TriangulatedFragment html TriangulatedOutline html azel.to.sphere.colatitude html azimuthal.conformal html azimuthal.equalarea html azimuthal.equidistant html bary.to.sphere.cart html central.angle html checkDatadir html circle html compute.intersections.sphere html compute.kernel.estimate html create.polar.cart.grid html csv.read.dataset html dE html depthplot3D html directories html f html fire html flatplot.AnnotatedOutline html flatplot.Outline html flatplot html flatplot.ReconstructedOutline html flatplot.StitchedOutline html flatplot.TriangulatedOutline html flipped.triangles html flipped.triangles.cart html fp html identity.transform html idt.read.dataset html ijroi.read.dataset html ijroimulti.read.dataset html interpolate.image html invert.sphere html invert.sphere.to.hemisphere html karcher.mean.sphere html kde.L html kde.compute.concentration html kde.fhat html kde.fhat.cart html kr.compute.concentration html kr.sscv html kr.yhat html kr.yhat.cart html line.line.intersection html list.datasets html list_to_R6 html lvsLplot html morph.dataset.to.parabola html name.list html normalise.angle html orthographic html panlabel html parabola.arclength html parabola.invarclength html parse.dependencies html polar.cart.to.sphere.spherical html polartext html projection html projection.ReconstructedOutline html projection.RetinalReconstructedOutline html read.datacounts html read.datapoints html remove.identical.consecutive.rows html remove.intersections html report html retistruct html retistruct.batch html retistruct.batch.export.matlab html retistruct.batch.figures html retistruct.batch.get.titrations html retistruct.batch.plot.titrations html retistruct.batch.summary html retistruct.check.markup html retistruct.cli html retistruct.cli.figure html retistruct.cli.process html retistruct.export.matlab html retistruct.read.dataset html retistruct.read.markup html retistruct.read.recdata html retistruct.reconstruct html retistruct.save.markup html retistruct.save.recdata html rotate.axis html server html simplifyFragment html simplifyOutline html sinusoidal html sphere.cart.to.sphere.dualwedge html sphere.cart.to.sphere.spherical html sphere.cart.to.sphere.wedge html sphere.spherical.to.polar.cart html sphere.spherical.to.sphere.cart html sphere.tri.area html sphere.wedge.to.sphere.cart html spherical.to.polar.area html sphericalplot html sphericalplot.ReconstructedOutline html strain.colours html stretchMesh html tri.area html tri.area.signed html ui html vecnorm html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (retistruct)