* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘retistruct’ ...
** this is package ‘retistruct’ version ‘0.8.1’
** package ‘retistruct’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp4VwJUn/R.INSTALL3f64c32f46ec8d/retistruct/src'
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c bary2sph.c -o bary2sph.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c energy.c -o energy.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c retistruct_init.c -o retistruct_init.o
gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o retistruct.so bary2sph.o energy.o retistruct_init.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp4VwJUn/R.INSTALL3f64c32f46ec8d/retistruct/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp4VwJUn/R.INSTALL3f64c32f46ec8d/retistruct/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp4VwJUn/R.INSTALL3f64c32f46ec8d/retistruct/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-retistruct/00new/retistruct/libs
** R
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘retistruct’
finding HTML links ... done
AnnotatedOutline html
CountSet html
E html
Ecart html
Fcart html
FeatureSet html
FeatureSetCommon html
Fragment html
LandmarkSet html
Outline html
OutlineCommon html
PathOutline html
PointSet html
R6_to_list html
Rcart html
ReconstructedCountSet html
ReconstructedFeatureSet html
ReconstructedLandmarkSet html
ReconstructedOutline html
ReconstructedPointSet html
RetinalOutline html
RetinalReconstructedOutline html
StitchedOutline html
TriangulatedFragment html
TriangulatedOutline html
azel.to.sphere.colatitude html
azimuthal.conformal html
azimuthal.equalarea html
azimuthal.equidistant html
bary.to.sphere.cart html
central.angle html
checkDatadir html
circle html
compute.intersections.sphere html
compute.kernel.estimate html
create.polar.cart.grid html
csv.read.dataset html
dE html
depthplot3D html
directories html
f html
fire html
flatplot.AnnotatedOutline html
flatplot.Outline html
flatplot html
flatplot.ReconstructedOutline html
flatplot.StitchedOutline html
flatplot.TriangulatedOutline html
flipped.triangles html
flipped.triangles.cart html
fp html
identity.transform html
idt.read.dataset html
ijroi.read.dataset html
ijroimulti.read.dataset html
interpolate.image html
invert.sphere html
invert.sphere.to.hemisphere html
karcher.mean.sphere html
kde.L html
kde.compute.concentration html
kde.fhat html
kde.fhat.cart html
kr.compute.concentration html
kr.sscv html
kr.yhat html
kr.yhat.cart html
line.line.intersection html
list.datasets html
list_to_R6 html
lvsLplot html
morph.dataset.to.parabola html
name.list html
normalise.angle html
orthographic html
panlabel html
parabola.arclength html
parabola.invarclength html
parse.dependencies html
polar.cart.to.sphere.spherical html
polartext html
projection html
projection.ReconstructedOutline html
projection.RetinalReconstructedOutline
html
read.datacounts html
read.datapoints html
remove.identical.consecutive.rows html
remove.intersections html
report html
retistruct html
retistruct.batch html
retistruct.batch.export.matlab html
retistruct.batch.figures html
retistruct.batch.get.titrations html
retistruct.batch.plot.titrations html
retistruct.batch.summary html
retistruct.check.markup html
retistruct.cli html
retistruct.cli.figure html
retistruct.cli.process html
retistruct.export.matlab html
retistruct.read.dataset html
retistruct.read.markup html
retistruct.read.recdata html
retistruct.reconstruct html
retistruct.save.markup html
retistruct.save.recdata html
rotate.axis html
server html
simplifyFragment html
simplifyOutline html
sinusoidal html
sphere.cart.to.sphere.dualwedge html
sphere.cart.to.sphere.spherical html
sphere.cart.to.sphere.wedge html
sphere.spherical.to.polar.cart html
sphere.spherical.to.sphere.cart html
sphere.tri.area html
sphere.wedge.to.sphere.cart html
spherical.to.polar.area html
sphericalplot html
sphericalplot.ReconstructedOutline html
strain.colours html
stretchMesh html
tri.area html
tri.area.signed html
ui html
vecnorm html
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (retistruct)