* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘relsurv’ ...
** package ‘relsurv’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’
make[1]: Entering directory '/tmp/RtmppHjIOg/R.INSTALL3e81a86c735544/relsurv/src'
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c cmpfast.c -o cmpfast.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dmatrix.c -o dmatrix.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c exps.c -o exps.o
exps.c: In function ‘expc’:
exps.c:78:65: warning: "/*" within comment [-Wcomment]
78 | /*si2 = (double *)ALLOC(n, sizeof(double)); /*Si for each individual - a je to prav???*/
|
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c netfastp.c -o netfastp.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c netfastpinter.c -o netfastpinter.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c netfastpinter2.c -o netfastpinter2.o
netfastpinter2.c: In function ‘netfastpinter2’:
netfastpinter2.c:53:13: warning: variable ‘et2’ set but not used [-Wunused-but-set-variable]
53 | et2,
| ^~~
netfastpinter2.c:46:13: warning: unused variable ‘nprec’ [-Wunused-variable]
46 | nprec;
| ^~~~~
netfastpinter2.c:278:42: warning: ‘sisum’ may be used uninitialized [-Wmaybe-uninitialized]
278 | yidlisi[j]=hazard/sisum; //the total hazard divided by the si at the end of the crude interval
| ~~~~~~^~~~~~
netfastpinter2.c:61:13: note: ‘sisum’ was declared here
61 | sisum,
| ^~~~~
netfastpinter2.c:279:44: warning: ‘sisumtt’ may be used uninitialized [-Wmaybe-uninitialized]
279 | yidlisitt[j]=hazard/sisumtt; // the total hazard divided by the si at the beginning of the crude interval
| ~~~~~~^~~~~~~~
netfastpinter2.c:62:13: note: ‘sisumtt’ was declared here
62 | sisumtt,
| ^~~~~~~
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c netwei.c -o netwei.o
netwei.c: In function ‘netwei’:
netwei.c:195:7: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
195 | for (k=0; k<edim; k++)
| ^~~
netwei.c:197:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
197 | etime -= et2;
| ^~~~~
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c netweiDM.c -o netweiDM.o
netweiDM.c: In function ‘netweiDM’:
netweiDM.c:204:7: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
204 | for (k=0; k<edim; k++)
| ^~~
netweiDM.c:206:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
206 | etime -= et2;
| ^~~~~
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c pystep.c -o pystep.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c pystep2.c -o pystep2.o
pystep2.c:2:1: warning: "/*" within comment [-Wcomment]
2 | /*$Id: pystep.c 11166 2008-11-24 22:10:34Z therneau $ */
|
gcc-13 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o relsurv.so cmpfast.o dmatrix.o exps.o init.o netfastp.o netfastpinter.o netfastpinter2.o netwei.o netweiDM.o pystep.o pystep2.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmppHjIOg/R.INSTALL3e81a86c735544/relsurv/src'
make[1]: Entering directory '/tmp/RtmppHjIOg/R.INSTALL3e81a86c735544/relsurv/src'
make[1]: Leaving directory '/tmp/RtmppHjIOg/R.INSTALL3e81a86c735544/relsurv/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-relsurv/00new/relsurv/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘relsurv’
finding HTML links ... done
cmp.rel html
colrec html
epa html
expprep2 html
invtime html
joinrate html
nessie html
plot.cmp.rel html
plot.rs.zph html
plot_f html
plot_years html
rdata html
residuals.rsadd html
rs.br html
rs.diff html
rs.surv html
rs.surv.rsadd html
rs.zph html
rsadd html
rsmul html
rstrans html
slopop html
summary.cmp.rel html
survfit.rsadd html
survsplit html
transrate html
transrate.hld html
transrate.hmd html
years html
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (relsurv)