* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘regmed’ ...
** this is package ‘regmed’ version ‘2.1.5’
** package ‘regmed’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.3.0-5) 14.3.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpS25NcF/R.INSTALL111dbc627ad41/regmed/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo.h:29,
from RcppExports.cpp:4:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.’
71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
| ^
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c mvregmed.cpp -o mvregmed.o
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo.h:29,
from mvregmed.cpp:1:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.’
71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
| ^
mvregmed.cpp: In function ‘arma::mat col_outerprod_row(arma::mat&, arma::mat&, int, int)’:
mvregmed.cpp:127:9: warning: unused variable ‘ncolA’ [-Wunused-variable]
127 | int ncolA = A.n_cols;
| ^~~~~
mvregmed.cpp:129:9: warning: unused variable ‘nrowB’ [-Wunused-variable]
129 | int nrowB = B.n_rows;
| ^~~~~
mvregmed.cpp: In function ‘int count_df(arma::mat&)’:
mvregmed.cpp:464:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
464 | for (int i = 0; i < A.n_rows; i++) {
| ~~^~~~~~~~~~
mvregmed.cpp:465:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
465 | for (int j = 0; j < A.n_cols; j++) {
| ~~^~~~~~~~~~
mvregmed.cpp: In function ‘int count_df_Vary(arma::mat&)’:
mvregmed.cpp:477:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
477 | for (int i = 0; i < V.n_rows; i++) {
| ~~^~~~~~~~~~
mvregmed.cpp:478:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
478 | for (int j = i; j < V.n_cols; j++) {
| ~~^~~~~~~~~~
mvregmed.cpp: In function ‘void print_vec(arma::vec)’:
mvregmed.cpp:617:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘unsigned int’} [-Wsign-compare]
617 | for(int i = 0; i < x.size(); i++){
| ~~^~~~~~~~~~
mvregmed.cpp: In function ‘Rcpp::List rcpp_mvregmed(arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, double, double, int, int, double, double, double, bool)’:
mvregmed.cpp:773:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
773 | for (int i_alpha = 0; i_alpha < alpha.n_rows; i_alpha++) {
| ~~~~~~~~^~~~~~~~~~~~~~
mvregmed.cpp:774:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
774 | for (int j_alpha = 0; j_alpha < alpha.n_cols; j_alpha++) {
| ~~~~~~~~^~~~~~~~~~~~~~
mvregmed.cpp:880:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
880 | for (int i_beta = 0; i_beta < beta.n_rows; i_beta++) {
| ~~~~~~~^~~~~~~~~~~~~
mvregmed.cpp:881:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
881 | for (int j_beta = 0; j_beta < beta.n_cols; j_beta++) {
| ~~~~~~~^~~~~~~~~~~~~
mvregmed.cpp:981:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
981 | for (int i_delta = 0; i_delta < delta.n_rows; i_delta++) {
| ~~~~~~~~^~~~~~~~~~~~~~
mvregmed.cpp:982:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
982 | for (int j_delta = 0; j_delta < delta.n_cols; j_delta++) {
| ~~~~~~~~^~~~~~~~~~~~~~
mvregmed.cpp:1080:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
1080 | for (int i_vary = 0; i_vary < vary.n_rows; i_vary++) {
| ~~~~~~~^~~~~~~~~~~~~
mvregmed.cpp:1081:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
1081 | for (int j_vary = i_vary; j_vary < vary.n_cols; j_vary++) {
| ~~~~~~~^~~~~~~~~~~~~
mvregmed.cpp:696:10: warning: unused variable ‘pen_loss_end’ [-Wunused-variable]
696 | double pen_loss_end = 0.0;
| ^~~~~~~~~~~~
mvregmed.cpp:723:7: warning: unused variable ‘nt’ [-Wunused-variable]
723 | int nt = vary.n_rows;
| ^~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c regmed.cpp -o regmed.o
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo.h:29,
from regmed.cpp:1:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.’
71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
| ^
regmed.cpp: In function ‘arma::mat compute_B(arma::vec&, arma::vec&, double)’:
regmed.cpp:234:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
234 | for(int i = 0; i < B.n_rows; i++){
| ~~^~~~~~~~~~
regmed.cpp:244:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘unsigned int’} [-Wsign-compare]
244 | for(int i = 0; i < alpha.size(); i++){
| ~~^~~~~~~~~~~~~~
regmed.cpp: In function ‘arma::mat inverse_ImpCov(arma::vec&, arma::vec&, double, arma::mat&)’:
regmed.cpp:269:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘unsigned int’} [-Wsign-compare]
269 | for(int i = 0; i < alpha.size(); i++){
| ~~^~~~~~~~~~~~~~
regmed.cpp: In function ‘arma::vec update_theta(arma::vec&, arma::vec&, double, double, double)’:
regmed.cpp:325:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘unsigned int’} [-Wsign-compare]
325 | for(int i = 0; i < diff.size(); i++){
| ~~^~~~~~~~~~~~~
regmed.cpp:334:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘unsigned int’} [-Wsign-compare]
334 | for(int i = 0; i < diff.size(); i++){
| ~~^~~~~~~~~~~~~~
regmed.cpp:338:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘unsigned int’} [-Wsign-compare]
338 | for(int i = 0; i < diff.size(); i++){
| ~~^~~~~~~~~~~~~~
regmed.cpp: In function ‘double penalty(arma::vec&, arma::vec&, double, double, double, double)’:
regmed.cpp:369:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘unsigned int’} [-Wsign-compare]
369 | for(int i = 0; i < alpha.size(); i++){
| ~~^~~~~~~~~~~~~~
regmed.cpp: In function ‘Rcpp::List rcpp_regmed(arma::vec, arma::vec, double, double, double, arma::mat, arma::mat, double, double, double, double, int, int, double, double, double, bool)’:
regmed.cpp:759:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘unsigned int’} [-Wsign-compare]
759 | for(int i = 0; i < alpha.size(); i++){
| ~~^~~~~~~~~~~~~~
regmed.cpp:501:10: warning: unused variable ‘varx_old’ [-Wunused-variable]
501 | double varx_old = 0.0;
| ^~~~~~~~
regmed.cpp:502:10: warning: unused variable ‘varx_new’ [-Wunused-variable]
502 | double varx_new = 0.0;
| ^~~~~~~~
regmed.cpp:503:10: warning: unused variable ‘varx_diff’ [-Wunused-variable]
503 | double varx_diff = 0.0;
| ^~~~~~~~~
regmed.cpp:507:10: warning: unused variable ‘vary_diff’ [-Wunused-variable]
507 | double vary_diff = 0.0;
| ^~~~~~~~~
regmed.cpp:514:10: warning: unused variable ‘pen_loss_end’ [-Wunused-variable]
514 | double pen_loss_end = 0.0;
| ^~~~~~~~~~~~
regmed.cpp:526:10: warning: unused variable ‘grad_varx’ [-Wunused-variable]
526 | double grad_varx = 0.0;
| ^~~~~~~~~
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o regmed.so RcppExports.o mvregmed.o regmed.o -fopenmp -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpS25NcF/R.INSTALL111dbc627ad41/regmed/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpS25NcF/R.INSTALL111dbc627ad41/regmed/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpS25NcF/R.INSTALL111dbc627ad41/regmed/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-regmed/00new/regmed/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘regmed’
finding HTML links ... done
medsim html
mvregmed.dat.check html
mvregmed.edges html
mvregmed.fit html
mvregmed.graph.attributes html
mvregmed.grid html
mvregmed.grid.bestfit html
mvregmed.grid.data html
mvregmed.grid.update html
mvregmed.init html
mvregmed.lavaan.dat html
mvregmed.lavaan.model html
plot.mvregmed.grid html
plot.regmed.grid html
regmed-package html
regmed.edges html
regmed.fit html
regmed.grid html
regmed.grid.bestfit html
regmed.lavaan.dat html
regmed.lavaan.model html
regmed.prefilter html
summary.mvregmed html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (regmed)