* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘registr’ ...
** package ‘registr’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (Debian 13.2.0-13) 13.2.0’
using C++11
make[1]: Entering directory '/tmp/Rtmpjdnjl8/R.INSTALL2cf3a71a8b4222/registr/src'
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c expectedScores.cpp -o expectedScores.o
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c expectedXi.cpp -o expectedXi.o
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c squareTheta.cpp -o squareTheta.o
g++-13 -std=gnu++11 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o registr.so RcppExports.o expectedScores.o expectedXi.o squareTheta.o -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -lpcre2-8 -ldeflate -llzma -lbz2 -lz -ltirpc -lrt -ldl -lm -licuuc -licui18n -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/Rtmpjdnjl8/R.INSTALL2cf3a71a8b4222/registr/src'
make[1]: Entering directory '/tmp/Rtmpjdnjl8/R.INSTALL2cf3a71a8b4222/registr/src'
make[1]: Leaving directory '/tmp/Rtmpjdnjl8/R.INSTALL2cf3a71a8b4222/registr/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-registr/00new/registr/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘registr’
    finding HTML links ... done
    amp_curve                               html  
    bfpca                                   html  
    bfpca_argPreparation                    html  
    bfpca_optimization                      html  
    bs_deriv                                html  
    coarsen_index                           html  
    constraints                             html  
    cov_hall                                html  
    crossprods_irregular                    html  
    crossprods_regular                      html  
    data_clean                              html  
    deriv.inv.logit                         html  
    determine_npc                           html  
    ensure_proper_beta                      html  
    expectedScores                          html  
    expectedXi                              html  
    fpca_gauss                              html  
    fpca_gauss_argPreparation               html  
    fpca_gauss_optimization                 html  
    gfpca_twoStep                           html  
    finding level-2 HTML links ... done

    grid_subj_create                        html  
    growth_incomplete                       html  
    initial_params                          html  
    lambdaF                                 html  
    loss_h                                  html  
    loss_h_gradient                         html  
    mean_curve                              html  
    mean_sim                                html  
    nhanes                                  html  
    piecewise_linear2_hinv                  html  
    plot.fpca                               html  
    psi1_sim                                html  
    psi2_sim                                html  
    register_fpca                           html  
    registr                                 html  
    registr_oneCurve                        html  
    simulate_functional_data                html  
    simulate_unregistered_curves            html  
    squareTheta                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (registr)