* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘redistmetrics’ ...
** package ‘redistmetrics’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (Debian 13.2.0-23) 13.2.0’
using C++17
make[1]: Entering directory '/tmp/Rtmp0Lws6d/R.INSTALLdf0096e09d5fe/redistmetrics/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppThread/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppThread/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic -g -O2 -Wall -pedantic -mtune=native -c compactness.cpp -o compactness.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppThread/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic -g -O2 -Wall -pedantic -mtune=native -c competitiveness.cpp -o competitiveness.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppThread/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic -g -O2 -Wall -pedantic -mtune=native -c contiguity.cpp -o contiguity.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppThread/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic -g -O2 -Wall -pedantic -mtune=native -c distances.cpp -o distances.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppThread/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic -g -O2 -Wall -pedantic -mtune=native -c kirchhoff.cpp -o kirchhoff.o
In file included from kirchhoff.cpp:2:
../inst/include/kirchhoff_inline.h: In function ‘double log_st_distr(const Graph&, const arma::umat&, const arma::uvec&, int, int, int)’:
../inst/include/kirchhoff_inline.h:25:27: warning: comparison of integer expressions of different signedness: ‘const long long unsigned int’ and ‘int’ [-Wsign-compare]
25 | if (districts(i, idx) == district && counties(i) == county) {
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
../inst/include/kirchhoff_inline.h:25:54: warning: comparison of integer expressions of different signedness: ‘const long long unsigned int’ and ‘int’ [-Wsign-compare]
25 | if (districts(i, idx) == district && counties(i) == county) {
| ~~~~~~~~~~~~^~~~~~~~~
../inst/include/kirchhoff_inline.h:34:27: warning: comparison of integer expressions of different signedness: ‘const long long unsigned int’ and ‘int’ [-Wsign-compare]
34 | if (districts(i, idx) != district || counties(i) != county) continue;
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
../inst/include/kirchhoff_inline.h:34:54: warning: comparison of integer expressions of different signedness: ‘const long long unsigned int’ and ‘int’ [-Wsign-compare]
34 | if (districts(i, idx) != district || counties(i) != county) continue;
| ~~~~~~~~~~~~^~~~~~~~~
../inst/include/kirchhoff_inline.h:43:32: warning: comparison of integer expressions of different signedness: ‘const long long unsigned int’ and ‘int’ [-Wsign-compare]
43 | if (districts(nbor, idx) != district || counties(nbor) != county) continue;
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
../inst/include/kirchhoff_inline.h:43:62: warning: comparison of integer expressions of different signedness: ‘const long long unsigned int’ and ‘int’ [-Wsign-compare]
43 | if (districts(nbor, idx) != district || counties(nbor) != county) continue;
| ~~~~~~~~~~~~~~~^~~~~~~~~
../inst/include/kirchhoff_inline.h: In function ‘double log_st_contr(const Graph&, const arma::umat&, const arma::uvec&, int, int, int)’:
../inst/include/kirchhoff_inline.h:70:27: warning: comparison of integer expressions of different signedness: ‘const long long unsigned int’ and ‘int’ [-Wsign-compare]
70 | if (districts(i, idx) != district) continue;
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
../inst/include/kirchhoff_inline.h:85:27: warning: comparison of integer expressions of different signedness: ‘const long long unsigned int’ and ‘int’ [-Wsign-compare]
85 | if (districts(i, idx) != district) continue;
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
../inst/include/kirchhoff_inline.h:93:32: warning: comparison of integer expressions of different signedness: ‘const long long unsigned int’ and ‘int’ [-Wsign-compare]
93 | if (districts(nbor, idx) != district || pos.at(nbor) == cty) continue;
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
kirchhoff.cpp: In function ‘Rcpp::NumericVector n_removed(const Graph&, const arma::umat&, int)’:
kirchhoff.cpp:43:36: warning: comparison of integer expressions of different signedness: ‘const long long unsigned int’ and ‘int’ [-Wsign-compare]
43 | if (districts(nbors[j], n) != dist) removed += 1.0;
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppThread/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic -g -O2 -Wall -pedantic -mtune=native -c partisan.cpp -o partisan.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppThread/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic -g -O2 -Wall -pedantic -mtune=native -c reindex.cpp -o reindex.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppThread/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic -g -O2 -Wall -pedantic -mtune=native -c segregation.cpp -o segregation.o
segregation.cpp: In function ‘Rcpp::NumericVector segregationcalc(Rcpp::NumericMatrix, Rcpp::NumericVector, Rcpp::NumericVector)’:
segregation.cpp:54:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘long long unsigned int’} [-Wsign-compare]
54 | for(int k = 0; k < findCds.size(); k++){
| ~~^~~~~~~~~~~~~~~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppThread/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic -g -O2 -Wall -pedantic -mtune=native -c splits.cpp -o splits.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppThread/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic -g -O2 -Wall -pedantic -mtune=native -c tally.cpp -o tally.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppThread/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic -g -O2 -Wall -pedantic -mtune=native -c varinfo.cpp -o varinfo.o
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o redistmetrics.so RcppExports.o compactness.o competitiveness.o contiguity.o distances.o kirchhoff.o partisan.o reindex.o segregation.o splits.o tally.o varinfo.o -latomic -lpthread -latomic -lpthread -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -fopenmp -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/Rtmp0Lws6d/R.INSTALLdf0096e09d5fe/redistmetrics/src'
make[1]: Entering directory '/tmp/Rtmp0Lws6d/R.INSTALLdf0096e09d5fe/redistmetrics/src'
make[1]: Leaving directory '/tmp/Rtmp0Lws6d/R.INSTALLdf0096e09d5fe/redistmetrics/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-redistmetrics/00new/redistmetrics/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘redistmetrics’
finding HTML links ... done
by_plan html
comp_bc html
comp_box_reock html
comp_ch html
comp_edges_rem html
comp_fh html
comp_frac_kept html
comp_log_st html
comp_lw html
comp_polsby html
comp_reock html
comp_schwartz html
comp_skew html
comp_x_sym html
comp_y_sym html
compet_talisman html
dist_euc html
dist_ham html
dist_info html
dist_man html
inc_pairs html
list_fn html
nh html
nh_m html
nh_map html
nh_plans html
part_bias html
part_decl html
part_decl_simple html
part_dseats html
part_dvs html
part_egap html
part_egap_ep html
part_lop_wins html
part_mean_median html
part_resp html
part_rmd html
part_sscd html
part_tau_gap html
pipe html
prep_perims html
seg_dissim html
splits_admin html
splits_count html
splits_district_fuzzy html
splits_multi html
splits_sub_admin html
splits_total html
tally html
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (redistmetrics)