* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘rcdk’ ...
** this is package ‘rcdk’ version ‘3.8.1’
** package ‘rcdk’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘rcdk’
    finding HTML links ... done
    Atoms                                   html  
    Molecule                                html  
    bpdata                                  html  
    cdk.version                             html  
    cdkFormula-class                        html  
    compare.isotope.pattern                 html  
    convert.implicit.to.explicit            html  
    copy.image.to.clipboard                 html  
    do.aromaticity                          html  
    do.isotopes                             html  
    eval.atomic.desc                        html  
    eval.desc                               html  
    generate.2d.coordinates                 html  
    generate.formula                        html  
    generate.formula.iter                   html  
    get.adjacency.matrix                    html  
    get.alogp                               html  
    get.atom.count                          html  
    get.atom.index                          html  
    get.atomic.desc.names                   html  
    get.atomic.number                       html  
    get.atoms                               html  
    get.bond.order                          html  
    get.bonds                               html  
    get.charge                              html  
    get.chem.object.builder                 html  
    get.connected.atom                      html  
    get.connected.atoms                     html  
    get.connection.matrix                   html  
    get.depictor                            html  
    get.desc.categories                     html  
    get.desc.names                          html  
    get.element.types                       html  
    get.exact.mass                          html  
    get.exhaustive.fragments                html  
    get.fingerprint                         html  
Rd warning: get.fingerprint.Rd:59: missing link ‘fingerprint-class’
Rd warning: get.fingerprint.Rd:59: missing link ‘featvec-class’
    get.formal.charge                       html  
    get.formula                             html  
    get.hydrogen.count                      html  
    get.isotope.pattern.generator           html  
    get.isotope.pattern.similarity          html  
    get.isotopes.pattern                    html  
    get.largest.component                   html  
    get.mcs                                 html  
    get.mol2formula                         html  
    get.murcko.fragments                    html  
    get.natural.mass                        html  
    get.point2d                             html  
    get.point3d                             html  
    get.properties                          html  
    get.property                            html  
    get.smiles                              html  
    get.smiles.parser                       html  
    get.stereo.types                        html  
    get.stereocenters                       html  
    get.symbol                              html  
    get.title                               html  
    get.total.charge                        html  
    get.total.formal.charge                 html  
    get.total.hydrogen.count                html  
    get.tpsa                                html  
    get.volume                              html  
    get.xlogp                               html  
    iload.molecules                         html  
    is.aliphatic                            html  
    is.aromatic                             html  
    is.connected                            html  
    is.in.ring                              html  
    is.neutral                              html  
    isvalid.formula                         html  
    load.molecules                          html  
    matches                                 html  
    parse.smiles                            html  
    rcdk-deprecated                         html  
    remove.hydrogens                        html  
    remove.property                         html  
    set.atom.types                          html  
    set.charge.formula                      html  
    set.property                            html  
    set.title                               html  
    smiles.flavors                          html  
    view.image.2d                           html  
    view.molecule.2d                        html  
    view.table                              html  
    write.molecules                         html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rcdk)