* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘rcaiman’ ...
** this is package ‘rcaiman’ version ‘1.2.2’
** package ‘rcaiman’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘rcaiman’
    finding HTML links ... done
    apply_thr                               html  
Rd warning: apply_thr.Rd:10: missing link ‘SpatRaster-class’
Rd warning: apply_thr.Rd:13: missing link ‘SpatRaster-class’
Rd warning: apply_thr.Rd:24: missing link ‘SpatRaster-class’
Rd warning: apply_thr.Rd:16: missing link ‘SpatRaster-class’
    azimuth_image                           html  
Rd warning: azimuth_image.Rd:10: missing link ‘SpatRaster-class’
Rd warning: azimuth_image.Rd:18: missing link ‘SpatRaster-class’
    calc_co                                 html  
Rd warning: calc_co.Rd:10: missing link ‘SpatRaster-class’
Rd warning: calc_co.Rd:12: missing link ‘SpatRaster-class’
Rd warning: calc_co.Rd:15: missing link ‘SpatRaster-class’
Rd warning: calc_co.Rd:17: missing link ‘SpatRaster-class’
    calc_diameter                           html  
    calc_relative_radius                    html  
    calc_zenith_colrow                      html  
    calibrate_lens                          html  
    chessboard                              html  
Rd warning: chessboard.Rd:10: missing link ‘SpatRaster-class’
Rd warning: chessboard.Rd:15: missing link ‘SpatRaster-class’
    cie_sky_model_raster                    html  
Rd warning: cie_sky_model_raster.Rd:10: missing link ‘SpatRaster-class’
Rd warning: cie_sky_model_raster.Rd:12: missing link ‘SpatRaster-class’
    colorfulness                            html  
Rd warning: colorfulness.Rd:10: missing link ‘SpatRaster-class’
Rd warning: colorfulness.Rd:13: missing link ‘SpatRaster-class’
    correct_vignetting                      html  
Rd warning: correct_vignetting.Rd:10: missing link ‘SpatRaster-class’
Rd warning: correct_vignetting.Rd:12: missing link ‘SpatRaster-class’
    crop_caim                               html  
Rd warning: crop_caim.Rd:10: missing link ‘SpatRaster-class’
Rd warning: crop_caim.Rd:24: missing link ‘SpatRaster-class’
    crosscalibrate_lens                     html  
    defuzzify                               html  
Rd warning: defuzzify.Rd:10: missing link ‘SpatRaster-class’
Rd warning: defuzzify.Rd:13: missing link ‘SpatRaster-class’
Rd warning: defuzzify.Rd:17: missing link ‘SpatRaster-class’
    enhance_caim                            html  
Rd warning: enhance_caim.Rd:19: missing link ‘SpatRaster-class’
Rd warning: enhance_caim.Rd:22: missing link ‘SpatRaster-class’
Rd warning: enhance_caim.Rd:25: missing link ‘color-class’
Rd warning: enhance_caim.Rd:51: missing link ‘SpatRaster-class’
    expand_noncircular                      html  
Rd warning: expand_noncircular.Rd:10: missing link ‘SpatRaster-class’
Rd warning: expand_noncircular.Rd:13: missing link ‘SpatRaster-class’
Rd warning: expand_noncircular.Rd:19: missing link ‘SpatRaster-class’
    extract_dn                              html  
Rd warning: extract_dn.Rd:10: missing link ‘SpatRaster-class’
Rd warning: extract_dn.Rd:28: missing link ‘color-class’
    extract_feature                         html  
Rd warning: extract_feature.Rd:16: missing link ‘SpatRaster-class’
Rd warning: extract_feature.Rd:18: missing link ‘SpatRaster-class’
Rd warning: extract_feature.Rd:39: missing link ‘SpatRaster-class’
Rd warning: extract_feature.Rd:30: missing link ‘SpatRaster-class’
    extract_radiometry                      html  
Rd warning: extract_radiometry.Rd:10: missing link ‘SpatRaster-class’
    extract_rl                              html  
Rd warning: extract_rl.Rd:10: missing link ‘SpatRaster-class’
Rd warning: extract_rl.Rd:14: missing link ‘SpatRaster-class’
Rd warning: extract_rl.Rd:16: missing link ‘SpatRaster-class’
    extract_sky_points                      html  
Rd warning: extract_sky_points.Rd:10: missing link ‘SpatRaster-class’
Rd warning: extract_sky_points.Rd:14: missing link ‘SpatRaster-class’
Rd warning: extract_sky_points.Rd:17: missing link ‘SpatRaster-class’
    extract_sky_points_simple               html  
Rd warning: extract_sky_points_simple.Rd:10: missing link ‘SpatRaster-class’
Rd warning: extract_sky_points_simple.Rd:14: missing link ‘SpatRaster-class’
Rd warning: extract_sky_points_simple.Rd:16: missing link ‘SpatRaster-class’
    extract_sun_coord                       html  
Rd warning: extract_sun_coord.Rd:10: missing link ‘SpatRaster-class’
Rd warning: extract_sun_coord.Rd:14: missing link ‘SpatRaster-class’
Rd warning: extract_sun_coord.Rd:16: missing link ‘SpatRaster-class’
Rd warning: extract_sun_coord.Rd:18: missing link ‘SpatRaster-class’
Rd warning: extract_sun_coord.Rd:21: missing link ‘SpatRaster-class’
    find_sky_pixels                         html  
Rd warning: find_sky_pixels.Rd:10: missing link ‘SpatRaster-class’
Rd warning: find_sky_pixels.Rd:14: missing link ‘SpatRaster-class’
Rd warning: find_sky_pixels.Rd:16: missing link ‘SpatRaster-class’
Rd warning: find_sky_pixels.Rd:23: missing link ‘SpatRaster-class’
    find_sky_pixels_nonnull                 html  
Rd warning: find_sky_pixels_nonnull.Rd:10: missing link ‘SpatRaster-class’
Rd warning: find_sky_pixels_nonnull.Rd:14: missing link ‘SpatRaster-class’
Rd warning: find_sky_pixels_nonnull.Rd:21: missing link ‘SpatRaster-class’
Rd warning: find_sky_pixels_nonnull.Rd:31: missing link ‘SpatRaster-class’
    fisheye_to_equidistant                  html  
Rd warning: fisheye_to_equidistant.Rd:19: missing link ‘SpatRaster-class’
Rd warning: fisheye_to_equidistant.Rd:21: missing link ‘SpatRaster-class’
Rd warning: fisheye_to_equidistant.Rd:23: missing link ‘SpatRaster-class’
Rd warning: fisheye_to_equidistant.Rd:25: missing link ‘SpatRaster-class’
    fisheye_to_pano                         html  
Rd warning: fisheye_to_pano.Rd:10: missing link ‘SpatRaster-class’
Rd warning: fisheye_to_pano.Rd:12: missing link ‘SpatRaster-class’
Rd warning: fisheye_to_pano.Rd:14: missing link ‘SpatRaster-class’
    fit_cie_sky_model                       html  
Rd warning: fit_cie_sky_model.Rd:23: missing link ‘SpatRaster-class’
Rd warning: fit_cie_sky_model.Rd:27: missing link ‘SpatRaster-class’
Rd warning: fit_cie_sky_model.Rd:29: missing link ‘SpatRaster-class’
    fit_coneshaped_model                    html  
    fit_trend_surface                       html  
Rd warning: fit_trend_surface.Rd:10: missing link ‘SpatRaster-class’
Rd warning: fit_trend_surface.Rd:14: missing link ‘SpatRaster-class’
Rd warning: fit_trend_surface.Rd:16: missing link ‘SpatRaster-class’
Rd warning: fit_trend_surface.Rd:18: missing link ‘SpatRaster-class’
Rd warning: fit_trend_surface.Rd:21: missing link ‘SpatRaster-class’
Rd warning: fit_trend_surface.Rd:34: missing link ‘SpatRaster-class’
    fix_reconstructed_sky                   html  
Rd warning: fix_reconstructed_sky.Rd:10: missing link ‘SpatRaster-class’
Rd warning: fix_reconstructed_sky.Rd:13: missing link ‘SpatRaster-class’
Rd warning: fix_reconstructed_sky.Rd:15: missing link ‘SpatRaster-class’
Rd warning: fix_reconstructed_sky.Rd:18: missing link ‘SpatRaster-class’
Rd warning: fix_reconstructed_sky.Rd:22: missing link ‘SpatRaster-class’
    gbc                                     html  
Rd warning: gbc.Rd:10: missing link ‘SpatRaster-class’
    interpolate_sky_points                  html  
Rd warning: interpolate_sky_points.Rd:14: missing link ‘SpatRaster-class’
Rd warning: interpolate_sky_points.Rd:28: missing link ‘SpatRaster-class’
    lens                                    html  
    local_fuzzy_thresholding                html  
Rd warning: local_fuzzy_thresholding.Rd:10: missing link ‘SpatRaster-class’
Rd warning: local_fuzzy_thresholding.Rd:13: missing link ‘SpatRaster-class’
Rd warning: local_fuzzy_thresholding.Rd:16: missing link ‘SpatRaster-class’
Rd warning: local_fuzzy_thresholding.Rd:28: missing link ‘SpatRaster-class’
    mask_hs                                 html  
Rd warning: mask_hs.Rd:10: missing link ‘SpatRaster-class’
Rd warning: mask_hs.Rd:16: missing link ‘SpatRaster-class’
    mask_sunlit_canopy                      html  
Rd warning: mask_sunlit_canopy.Rd:10: missing link ‘SpatRaster-class’
Rd warning: mask_sunlit_canopy.Rd:13: missing link ‘SpatRaster-class’
Rd warning: mask_sunlit_canopy.Rd:17: missing link ‘SpatRaster-class’
    masking                                 html  
Rd warning: masking.Rd:10: missing link ‘SpatRaster-class’
Rd warning: masking.Rd:14: missing link ‘SpatRaster-class’
Rd warning: masking.Rd:21: missing link ‘SpatRaster-class’
    membership_to_color                     html  
Rd warning: membership_to_color.Rd:10: missing link ‘SpatRaster-class’
Rd warning: membership_to_color.Rd:13: missing link ‘color-class’
Rd warning: membership_to_color.Rd:20: missing link ‘SpatRaster-class’
    normalize                               html  
Rd warning: normalize.Rd:10: missing link ‘SpatRaster-class’
    obia                                    html  
Rd warning: obia.Rd:10: missing link ‘SpatRaster-class’
Rd warning: obia.Rd:14: missing link ‘SpatRaster-class’
Rd warning: obia.Rd:16: missing link ‘SpatRaster-class’
Rd warning: obia.Rd:18: missing link ‘SpatRaster-class’
Rd warning: obia.Rd:21: missing link ‘SpatRaster-class’
Rd warning: obia.Rd:29: missing link ‘SpatRaster-class’
    ootb_mblt                               html  
Rd warning: ootb_mblt.Rd:10: missing link ‘SpatRaster-class’
Rd warning: ootb_mblt.Rd:14: missing link ‘SpatRaster-class’
Rd warning: ootb_mblt.Rd:16: missing link ‘SpatRaster-class’
Rd warning: ootb_mblt.Rd:18: missing link ‘SpatRaster-class’
    ootb_obia                               html  
Rd warning: ootb_obia.Rd:18: missing link ‘SpatRaster-class’
Rd warning: ootb_obia.Rd:21: missing link ‘SpatRaster-class’
Rd warning: ootb_obia.Rd:23: missing link ‘SpatRaster-class’
Rd warning: ootb_obia.Rd:25: missing link ‘SpatRaster-class’
Rd warning: ootb_obia.Rd:29: missing link ‘color-class’
Rd warning: ootb_obia.Rd:43: missing link ‘SpatRaster-class’
    ootb_sky_reconstruction                 html  
Rd warning: ootb_sky_reconstruction.Rd:28: missing link ‘SpatRaster-class’
Rd warning: ootb_sky_reconstruction.Rd:32: missing link ‘SpatRaster-class’
Rd warning: ootb_sky_reconstruction.Rd:34: missing link ‘SpatRaster-class’
Rd warning: ootb_sky_reconstruction.Rd:36: missing link ‘SpatRaster-class’
Rd warning: ootb_sky_reconstruction.Rd:39: missing link ‘SpatRaster-class’
Rd warning: ootb_sky_reconstruction.Rd:95: missing link ‘SpatRaster-class’
Rd warning: ootb_sky_reconstruction.Rd:102: missing link ‘SpatRaster-class’
    optim_normalize                         html  
Rd warning: optim_normalize.Rd:10: missing link ‘SpatRaster-class’
Rd warning: optim_normalize.Rd:13: missing link ‘SpatRaster-class’
    percentage_of_clipped_highlights        html  
Rd warning: percentage_of_clipped_highlights.Rd:10: missing link ‘SpatRaster-class’
Rd warning: percentage_of_clipped_highlights.Rd:12: missing link ‘SpatRaster-class’
    polar_qtree                             html  
Rd warning: polar_qtree.Rd:10: missing link ‘SpatRaster-class’
Rd warning: polar_qtree.Rd:12: missing link ‘SpatRaster-class’
Rd warning: polar_qtree.Rd:14: missing link ‘SpatRaster-class’
Rd warning: polar_qtree.Rd:22: missing link ‘SpatRaster-class’
    qtree                                   html  
Rd warning: qtree.Rd:10: missing link ‘SpatRaster-class’
Rd warning: qtree.Rd:18: missing link ‘SpatRaster-class’
    rcaiman-package                         html  
    read_bin                                html  
Rd warning: read_bin.Rd:13: missing link ‘SpatRaster-class’
    read_caim                               html  
Rd warning: read_caim.Rd:26: missing link ‘SpatRaster-class’
    read_caim_raw                           html  
Rd warning: read_caim_raw.Rd:24: missing link ‘SpatRaster-class’
Rd warning: read_caim_raw.Rd:26: missing link ‘SpatRaster-class’
Rd warning: read_caim_raw.Rd:49: missing link ‘SpatRaster-class’
    read_manual_input                       html  
    read_opt_sky_coef                       html  
    regional_thresholding                   html  
Rd warning: regional_thresholding.Rd:17: missing link ‘SpatRaster-class’
Rd warning: regional_thresholding.Rd:21: missing link ‘SpatRaster-class’
Rd warning: regional_thresholding.Rd:35: missing link ‘SpatRaster-class’
    rings_segmentation                      html  
Rd warning: rings_segmentation.Rd:10: missing link ‘SpatRaster-class’
Rd warning: rings_segmentation.Rd:20: missing link ‘SpatRaster-class’
    row_col_from_zenith_azimuth             html  
Rd warning: row_col_from_zenith_azimuth.Rd:10: missing link ‘SpatRaster-class’
Rd warning: row_col_from_zenith_azimuth.Rd:12: missing link ‘SpatRaster-class’
    sectors_segmentation                    html  
Rd warning: sectors_segmentation.Rd:10: missing link ‘SpatRaster-class’
Rd warning: sectors_segmentation.Rd:20: missing link ‘SpatRaster-class’
    sky_grid_segmentation                   html  
Rd warning: sky_grid_segmentation.Rd:10: missing link ‘SpatRaster-class’
Rd warning: sky_grid_segmentation.Rd:12: missing link ‘SpatRaster-class’
Rd warning: sky_grid_segmentation.Rd:24: missing link ‘SpatRaster-class’
    test_lens_coef                          html  
    thr_isodata                             html  
    thr_mblt                                html  
Rd warning: thr_mblt.Rd:10: missing link ‘SpatRaster-class’
    write_bin                               html  
Rd warning: write_bin.Rd:10: missing link ‘SpatRaster-class’
    write_caim                              html  
Rd warning: write_caim.Rd:10: missing link ‘SpatRaster-class’
    write_sky_points                        html  
    write_sun_coord                         html  
    zenith_azimuth_from_row_col             html  
Rd warning: zenith_azimuth_from_row_col.Rd:10: missing link ‘SpatRaster-class’
Rd warning: zenith_azimuth_from_row_col.Rd:12: missing link ‘SpatRaster-class’
    zenith_image                            html  
Rd warning: zenith_image.Rd:20: missing link ‘SpatRaster-class’
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rcaiman)