* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘rbiom’ ...
** this is package ‘rbiom’ version ‘3.1.0’
** package ‘rbiom’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** exec
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘rbiom’
    finding HTML links ... done
    adiv_boxplot                            html  
    adiv_corrplot                           html  
    adiv_stats                              html  
    adiv_table                              html  
    as.list.rbiom                           html  
    as.matrix.rbiom                         html  
    as_rbiom                                html  
    babies                                  html  
    bdiv_boxplot                            html  
    bdiv_clusters                           html  
    bdiv_corrplot                           html  
    bdiv_heatmap                            html  
    bdiv_ord_plot                           html  
    bdiv_ord_table                          html  
    bdiv_stats                              html  
    bdiv_table                              html  
    bdply                                   html  
    biom_inflate                            html  
    biom_merge                              html  
    biom_relativize                         html  
    biom_rescale                            html  
    convert_to                              html  
    distmat_ord_table                       html  
    distmat_stats                           html  
    documentation_biom.rbiom                html  
    documentation_clusters                  html  
    documentation_cmp                       html  
    documentation_default                   html  
    documentation_dist_test                 html  
    documentation_heatmap                   html  
    documentation_plot_return               html  
    documentation_rank.2                    html  
    documentation_rank.NULL                 html  
    documentation_return.biom               html  
    documentation_taxa.4                    html  
    export                                  html  
    gems                                    html  
    glimpse.rbiom                           html  
    hmp50                                   html  
    matrix_ops                              html  
    modify_metadata                         html  
    plot_heatmap                            html  
    pull.rbiom                              html  
    rare_corrplot                           html  
    rare_multiplot                          html  
    rare_stacked                            html  
    rarefy                                  html  
    rbiom-package                           html  
    rbiom_objects                           html  
    read_biom                               html  
    read_fasta                              html  
    read_tree                               html  
    reexports                               html  
    sample_sums                             html  
    slice_metadata                          html  
    speed                                   html  
    stats_boxplot                           html  
    stats_corrplot                          html  
    stats_table                             html  
    subset                                  html  
    suggest_inflate_depths                  html  
    suggest_rarefy_depth                    html  
    taxa_boxplot                            html  
    taxa_clusters                           html  
    taxa_corrplot                           html  
    taxa_heatmap                            html  
    taxa_map                                html  
    taxa_matrix                             html  
    taxa_stacked                            html  
    taxa_stats                              html  
    taxa_sums                               html  
    tree_subset                             html  
    with                                    html  
    write_biom                              html  
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rbiom)