* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘randomForest’ ...
** package ‘randomForest’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (Debian 13.2.0-23) 13.2.0’
using Fortran compiler: ‘GNU Fortran (Debian 13.2.0-23) 13.2.0’
make[1]: Entering directory '/tmp/RtmpDMEd3V/R.INSTALL38c04a5986bc5f/randomForest/src'
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c classTree.c -o classTree.o
classTree.c: In function ‘predictClassTree’:
classTree.c:453:47: warning: ‘cbestsplit’ may be used uninitialized [-Wmaybe-uninitialized]
453 | k = cbestsplit[(int) x[m + i * mdim] - 1 + k * maxcat] ?
| ^
classTree.c:422:22: note: ‘cbestsplit’ was declared here
422 | int m, i, j, k, *cbestsplit;
| ^~~~~~~~~~
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c regTree.c -o regTree.o
regTree.c: In function ‘predictRegTree’:
regTree.c:393:23: warning: ‘cbestsplit’ may be used uninitialized [-Wmaybe-uninitialized]
393 | k = cbestsplit[(int) x[m + i * mdim] - 1 + k * maxcat] ?
| ^
regTree.c:363:20: note: ‘cbestsplit’ was declared here
363 | int i, j, k, m, *cbestsplit;
| ^~~~~~~~~~
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c regrf.c -o regrf.o
regrf.c: In function ‘regRF’:
regrf.c:64:15: warning: variable ‘nind’ set but not used [-Wunused-but-set-variable]
64 | int *in, *nind, *nodex, *nodexts;
| ^~~~
regrf.c:60:55: warning: unused variable ‘ktmp’ [-Wunused-variable]
60 | int k, m, mr, n, nOOB, j, jout, idx, ntest, last, ktmp, nPerm,
| ^~~~
regrf.c:60:49: warning: unused variable ‘last’ [-Wunused-variable]
60 | int k, m, mr, n, nOOB, j, jout, idx, ntest, last, ktmp, nPerm,
| ^~~~
regrf.c:55:66: warning: unused variable ‘xrand’ [-Wunused-variable]
55 | double errts = 0.0, averrb, meanY, meanYts, varY, varYts, r, xrand,
| ^~~~~
regrf.c:55:25: warning: variable ‘averrb’ set but not used [-Wunused-but-set-variable]
55 | double errts = 0.0, averrb, meanY, meanYts, varY, varYts, r, xrand,
| ^~~~~~
regrf.c:205:25: warning: ‘ytree’ may be used uninitialized [-Wmaybe-uninitialized]
205 | predictRegTree(xts, ntest, mdim, lDaughter + idx,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
206 | rDaughter + idx, nodestatus + idx, ytree,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
207 | upper + idx, avnode + idx,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
208 | mbest + idx, treeSize[j], cat, *maxcat, nodexts);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
regrf.c:58:36: note: ‘ytree’ was declared here
58 | double *yb, *xtmp, *xb, *ytr, *ytree, *tgini;
| ^~~~~
regrf.c:205:25: warning: ‘nodexts’ may be used uninitialized [-Wmaybe-uninitialized]
205 | predictRegTree(xts, ntest, mdim, lDaughter + idx,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
206 | rDaughter + idx, nodestatus + idx, ytree,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
207 | upper + idx, avnode + idx,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
208 | mbest + idx, treeSize[j], cat, *maxcat, nodexts);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
regrf.c:64:30: note: ‘nodexts’ was declared here
64 | int *in, *nind, *nodex, *nodexts;
| ^~~~~~~
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rf.c -o rf.o
rf.c: In function ‘classRF’:
rf.c:176:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
176 | for (n = 0; n < nsample0; ++n)
| ^~~
rf.c:180:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
180 | strata_size = (int *) S_alloc(nstrata, sizeof(int));
| ^~~~~~~~~~~
rf.c:103:4: warning: variable ‘tp’ set but not used [-Wunused-but-set-variable]
103 | *tp, *wr, *bestsplitnext, *bestsplit;
| ^~
rf.c:98:41: warning: unused variable ‘ktmp’ [-Wunused-variable]
98 | int **strata_idx, *strata_size, last, ktmp, nEmpty, ntry;
| ^~~~
rf.c:98:35: warning: unused variable ‘last’ [-Wunused-variable]
98 | int **strata_idx, *strata_size, last, ktmp, nEmpty, ntry;
| ^~~~
rf.c:97:24: warning: variable ‘nind’ set but not used [-Wunused-but-set-variable]
97 | *at, *a, *b, *mind, *nind, *jts, *oobpair, *sampledIndices;
| ^~~~
rf.c:88:9: warning: variable ‘nimp’ set but not used [-Wunused-but-set-variable]
88 | mimp, nimp, near, nuse, noutall, nrightall, nrightimpall,
| ^~~~
rf.c:88:3: warning: variable ‘mimp’ set but not used [-Wunused-but-set-variable]
88 | mimp, nimp, near, nuse, noutall, nrightall, nrightimpall,
| ^~~~
rf.c:395:7: warning: ‘oobpair’ may be used uninitialized [-Wmaybe-uninitialized]
395 | computeProximity(prox, oobprox, nodex, jin, oobpair, near);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rf.c:97:37: note: ‘oobpair’ was declared here
97 | *at, *a, *b, *mind, *nind, *jts, *oobpair, *sampledIndices;
| ^~~~~~~
rf.c:343:7: warning: ‘nclts’ may be used uninitialized [-Wmaybe-uninitialized]
343 | TestSetError(countts, jts, clts, outclts, ntest, nclass, jb+1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
344 | errts + jb*(nclass+1), *labelts, nclts, cut);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rf.c:92:23: note: ‘nclts’ was declared here
92 | *nrightimp, *nout, *nclts, Ntree;
| ^~~~~
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c rfsub.f -o rfsub.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rfutils.c -o rfutils.o
rfutils.c: In function ‘sampleWithoutReplacementWithWeights’:
rfutils.c:346:9: warning: variable ‘sampledIndexCopy’ set but not used [-Wunused-but-set-variable]
346 | int sampledIndexCopy;
| ^~~~~~~~~~~~~~~~
rfutils.c:344:9: warning: variable ‘first’ set but not used [-Wunused-but-set-variable]
344 | int first;
| ^~~~~
gcc-13 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o randomForest.so classTree.o init.o regTree.o regrf.o rf.o rfsub.o rfutils.o -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpDMEd3V/R.INSTALL38c04a5986bc5f/randomForest/src'
make[1]: Entering directory '/tmp/RtmpDMEd3V/R.INSTALL38c04a5986bc5f/randomForest/src'
make[1]: Leaving directory '/tmp/RtmpDMEd3V/R.INSTALL38c04a5986bc5f/randomForest/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-randomForest/00new/randomForest/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘randomForest’
finding HTML links ... done
MDSplot html
classCenter html
combine html
getTree html
grow html
importance html
imports85 html
margin html
na.roughfix html
outlier html
partialPlot html
plot.randomForest html
predict.randomForest html
randomForest html
rfImpute html
rfNews html
rfcv html
treesize html
tuneRF html
varImpPlot html
varUsed html
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (randomForest)