* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘rPDBapi’ ...
** this is package ‘rPDBapi’ version ‘3.0.1’
** package ‘rPDBapi’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘rPDBapi’
    finding HTML links ... done
    ChemicalOperator                        html  
    ComparisonOperator                      html  
    ContainsPhraseOperator                  html  
    ContainsWordsOperator                   html  
    DefaultOperator                         html  
    ExactMatchOperator                      html  
    ExistsOperator                          html  
    InOperator                              html  
    QueryGroup                              html  
    QueryNode                               html  
    RangeOperator                           html  
    RequestOptions                          html  
    ScoredResult                            html  
    SeqMotifOperator                        html  
    SequenceOperator                        html  
    StructureOperator                       html  
    add_property                            html  
    as_rpdb_assembly                        html  
    as_rpdb_chemical_component              html  
    as_rpdb_entry                           html  
    as_rpdb_polymer_entity                  html  
    as_rpdb_structure                       html  
    autoresolve_sequence_type               html  
    build_assembly_id                       html  
    build_entity_id                         html  
    build_entry_id                          html  
    build_instance_id                       html  
    cache_info                              html  
    clear_rpdbapi_cache                     html  
    data_fetcher                            html  
    data_fetcher_batch                      html  
    describe_chemical                       html  
    extract_calpha_coordinates              html  
    extract_ligand_table                    html  
    extract_taxonomy_table                  html  
    fetch_data                              html  
    find_papers                             html  
    find_results                            html  
    generate_json_query                     html  
    get_fasta_from_rcsb_entry               html  
    get_info                                html  
    get_pdb_api_url                         html  
    get_pdb_file                            html  
    handle_api_errors                       html  
    infer_id_type                           html  
    infer_search_service                    html  
    join_structure_sequence                 html  
    list_rcsb_fields                        html  
    parse_fasta_text_to_list                html  
    parse_rcsb_id                           html  
    parse_response                          html  
    perform_search                          html  
    query_search                            html  
    rPDBapi-package                         html  
    return_data_as_dataframe                html  
    search_graphql                          html  
    search_rcsb_fields                      html  
    send_api_request                        html  
    summarize_assemblies                    html  
    summarize_entries                       html  
    validate_properties                     html  
    walk_nested_dict                        html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rPDBapi)