Install log for 'rEDM'

* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘rEDM’ ...
** package ‘rEDM’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (Debian 13.2.0-24) 13.2.0’
using C++17
make[1]: Entering directory '/tmp/RtmpRmGECS/R.INSTALL7c7427f78fadd/rEDM/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I ./cppEDM/src/ -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppThread/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c CCM.cpp -o CCM.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I ./cppEDM/src/ -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppThread/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c ComputeError.cpp -o ComputeError.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I ./cppEDM/src/ -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppThread/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c DataFrame.cpp -o DataFrame.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I ./cppEDM/src/ -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppThread/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c Embed.cpp -o Embed.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I ./cppEDM/src/ -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppThread/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c EmbedDim.cpp -o EmbedDim.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I ./cppEDM/src/ -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppThread/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c Multiview.cpp -o Multiview.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I ./cppEDM/src/ -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppThread/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c ParameterList.cpp -o ParameterList.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I ./cppEDM/src/ -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppThread/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c PredictInterval.cpp -o PredictInterval.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I ./cppEDM/src/ -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppThread/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c PredictNL.cpp -o PredictNL.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I ./cppEDM/src/ -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppThread/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppEDMCommon.cpp -o RcppEDMCommon.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I ./cppEDM/src/ -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppThread/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I ./cppEDM/src/ -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppThread/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c SMap.cpp -o SMap.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I ./cppEDM/src/ -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppThread/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c Simplex.cpp -o Simplex.o
make[2]: Entering directory '/tmp/RtmpRmGECS/R.INSTALL7c7427f78fadd/rEDM/src/cppEDM/src'
rm -f API.o CCM.o Common.o DateTime.o EDM.o EDM_Formatting.o EDM_Neighbors.o Eval.o Multiview.o Parameter.o Simplex.o SMap.o libEDM.a
make[2]: Leaving directory '/tmp/RtmpRmGECS/R.INSTALL7c7427f78fadd/rEDM/src/cppEDM/src'
make[2]: Entering directory '/tmp/RtmpRmGECS/R.INSTALL7c7427f78fadd/rEDM/src/cppEDM/src'
g++-13 -std=gnu++17 -g -O2 -Wall -pedantic -mtune=native  -fpic -DCCM_THREADED -DUSING_R -c API.cc
g++-13 -std=gnu++17 -g -O2 -Wall -pedantic -mtune=native  -fpic -DCCM_THREADED -DUSING_R -c CCM.cc
g++-13 -std=gnu++17 -g -O2 -Wall -pedantic -mtune=native  -fpic -DCCM_THREADED -DUSING_R -c Common.cc
g++-13 -std=gnu++17 -g -O2 -Wall -pedantic -mtune=native  -fpic -DCCM_THREADED -DUSING_R -c DateTime.cc
g++-13 -std=gnu++17 -g -O2 -Wall -pedantic -mtune=native  -fpic -DCCM_THREADED -DUSING_R -c EDM.cc
g++-13 -std=gnu++17 -g -O2 -Wall -pedantic -mtune=native  -fpic -DCCM_THREADED -DUSING_R -c EDM_Formatting.cc
g++-13 -std=gnu++17 -g -O2 -Wall -pedantic -mtune=native  -fpic -DCCM_THREADED -DUSING_R -c EDM_Neighbors.cc
g++-13 -std=gnu++17 -g -O2 -Wall -pedantic -mtune=native  -fpic -DCCM_THREADED -DUSING_R -c Eval.cc
g++-13 -std=gnu++17 -g -O2 -Wall -pedantic -mtune=native  -fpic -DCCM_THREADED -DUSING_R -c Multiview.cc
g++-13 -std=gnu++17 -g -O2 -Wall -pedantic -mtune=native  -fpic -DCCM_THREADED -DUSING_R -c Parameter.cc
g++-13 -std=gnu++17 -g -O2 -Wall -pedantic -mtune=native  -fpic -DCCM_THREADED -DUSING_R -c Simplex.cc
g++-13 -std=gnu++17 -g -O2 -Wall -pedantic -mtune=native  -fpic -DCCM_THREADED -DUSING_R -c SMap.cc
ar -rcs libEDM.a API.o CCM.o Common.o DateTime.o EDM.o EDM_Formatting.o EDM_Neighbors.o Eval.o Multiview.o Parameter.o Simplex.o SMap.o # AR passed from Makevars
cp libEDM.a ../lib/
make[2]: Leaving directory '/tmp/RtmpRmGECS/R.INSTALL7c7427f78fadd/rEDM/src/cppEDM/src'
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o rEDM.so CCM.o ComputeError.o DataFrame.o Embed.o EmbedDim.o Multiview.o ParameterList.o PredictInterval.o PredictNL.o RcppEDMCommon.o RcppExports.o SMap.o Simplex.o -L ./cppEDM/lib/ -lEDM -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpRmGECS/R.INSTALL7c7427f78fadd/rEDM/src'
make[1]: Entering directory '/tmp/RtmpRmGECS/R.INSTALL7c7427f78fadd/rEDM/src'
make[1]: Leaving directory '/tmp/RtmpRmGECS/R.INSTALL7c7427f78fadd/rEDM/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-rEDM/00new/rEDM/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘rEDM’
    finding HTML links ... done
    CCM                                     html  
    ComputeError                            html  
    Embed                                   html  
    EmbedDimension                          html  
    EvergladesFlow                          html  
    Lorenz5D                                html  
    MakeBlock                               html  
    Multiview                               html  
    PredictInterval                         html  
    PredictNonlinear                        html  
    SMap                                    html  
    Simplex                                 html  
    SurrogateData                           html  
    TentMap                                 html  
    TentMapNoise                            html  
    Thrips                                  html  
    block_3sp                               html  
    circle                                  html  
    paramecium_didinium                     html  
    rEDM                                    html  
    sardine_anchovy_sst                     html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* creating tarball
packaged installation of ‘rEDM’ as ‘rEDM_1.15.4_R_x86_64-pc-linux-gnu.tar.gz’
* DONE (rEDM)