* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘qtl2ggplot’ ...
** this is package ‘qtl2ggplot’ version ‘1.2.6’
** package ‘qtl2ggplot’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.3.0-10) 14.3.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp8zVWMS/R.INSTALL19328864f1f5a6/qtl2ggplot/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c arrange_genes.cpp -o arrange_genes.o
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o qtl2ggplot.so RcppExports.o arrange_genes.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp8zVWMS/R.INSTALL19328864f1f5a6/qtl2ggplot/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp8zVWMS/R.INSTALL19328864f1f5a6/qtl2ggplot/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp8zVWMS/R.INSTALL19328864f1f5a6/qtl2ggplot/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-qtl2ggplot/00new/qtl2ggplot/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘qtl2ggplot’
    finding HTML links ... done
    color_patterns_get                      html  
    color_patterns_pheno                    html  
    color_patterns_set                      html  
    ggplot_coef                             html  
    ggplot_genes                            html  
    ggplot_genes_internal                   html  
    ggplot_listof_scan1coef                 html  
    ggplot_onegeno                          html  
    ggplot_peaks                            html  
    ggplot_pxg                              html  
    ggplot_scan1                            html  
    ggplot_snpasso                          html  
    listof_scan1coef                        html  
    sdp_to_pattern                          html  
    summary_scan1                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (qtl2ggplot)