* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘qtl2convert’ ...
** this is package ‘qtl2convert’ version ‘0.30’
** package ‘qtl2convert’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.3.0-10) 14.3.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmprNnz0f/R.INSTALL1534c14c688976/qtl2convert/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c count_unique_geno.cpp -o count_unique_geno.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c encode_geno.cpp -o encode_geno.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c find_consensus_geno.cpp -o find_consensus_geno.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c find_unique_geno.cpp -o find_unique_geno.o
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o qtl2convert.so RcppExports.o count_unique_geno.o encode_geno.o find_consensus_geno.o find_unique_geno.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmprNnz0f/R.INSTALL1534c14c688976/qtl2convert/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmprNnz0f/R.INSTALL1534c14c688976/qtl2convert/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmprNnz0f/R.INSTALL1534c14c688976/qtl2convert/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-qtl2convert/00new/qtl2convert/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘qtl2convert’
    finding HTML links ... done
    cbind_smother                           html  
    count_unique_geno                       html  
    cross2_do_to_genail8                    html  
    cross2_ril_to_genril                    html  
    encode_geno                             html  
    find_consensus_geno                     html  
    find_unique_geno                        html  
    map_df_to_list                          html  
    map_list_to_df                          html  
    probs_doqtl_to_qtl2                     html  
    probs_qtl2_to_array                     html  
    probs_qtl2_to_doqtl                     html  
    probs_qtl_to_qtl2                       html  
    qtl2convert-package                     html  
    scan_qtl2_to_qtl                        html  
    scan_qtl_to_qtl2                        html  
    write2csv                               html  
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (qtl2convert)