* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘pumBayes’ ...
** this is package ‘pumBayes’ version ‘1.0.0’
** package ‘pumBayes’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.3.0-8) 14.3.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpgdpmkc/R.INSTALL30820e5e172588/pumBayes/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppDist/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppTN/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppDist/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppTN/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rtn1.cpp -o rtn1.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppDist/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mvtnorm/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppTN/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c three_utility_probit_helper_functions.cpp -o three_utility_probit_helper_functions.o
three_utility_probit_helper_functions.cpp: In function ‘Rcpp::List sample_probit_static_rcpp(arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, int, int, int, int, int, double, double, arma::vec, arma::mat, arma::vec, arma::mat, double, int, int, int, double, int, bool)’:
three_utility_probit_helper_functions.cpp:571:23: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
571 | if (!is_finite(vote_m(k, j))) {
| ~~~~~~~~~^~~~~~~~~~~~~~
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo:518,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo.h:32,
from three_utility_probit_helper_functions.cpp:1:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
three_utility_probit_helper_functions.cpp: In function ‘Rcpp::List sample_probit_dynamic_rcpp_flip(arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::uvec, arma::uvec, arma::uvec, arma::umat, arma::uvec, int, int, int, int, int, arma::vec, arma::mat, arma::vec, arma::mat, double, double, double, double, int, int, int, double, arma::uvec, arma::uvec, arma::uvec, arma::uvec, bool)’:
three_utility_probit_helper_functions.cpp:819:23: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
819 | if (!is_finite(vote_m(j, k))) {
| ~~~~~~~~~^~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
three_utility_probit_helper_functions.cpp: In function ‘arma::vec calc_waic_probit_bggum_three_utility(arma::mat, arma::mat, arma::mat, arma::mat, int)’:
three_utility_probit_helper_functions.cpp:1115:23: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
1115 | if (!is_finite(case_vote_m(i, j))) {
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
three_utility_probit_helper_functions.cpp: In function ‘arma::vec calc_waic_probit_bggum_three_utility_block_rcpp(arma::mat, arma::mat, arma::mat, arma::mat, arma::uvec, arma::mat)’:
three_utility_probit_helper_functions.cpp:1163:23: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
1163 | if (!is_finite(case_vote_m(i, j))) {
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
three_utility_probit_helper_functions.cpp: In function ‘arma::vec calc_waic_probit_bggum_three_utility_block_vote_rcpp(arma::mat, arma::mat, arma::mat, arma::mat, arma::mat)’:
three_utility_probit_helper_functions.cpp:1207:23: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
1207 | if (!is_finite(case_vote_m(i, j))) {
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
three_utility_probit_helper_functions.cpp: In function ‘arma::vec calc_waic_cpp(arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat)’:
three_utility_probit_helper_functions.cpp:1249:23: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
1249 | if (!is_finite(case_vote_m(ind, j))) {
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
three_utility_probit_helper_functions.cpp: In function ‘Rcpp::List sample_probit_dynamic_rcpp(arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::uvec, arma::uvec, arma::uvec, arma::umat, arma::uvec, int, int, int, int, int, arma::vec, arma::mat, arma::vec, arma::mat, double, double, double, double, int, int, int, double, arma::uvec, arma::uvec, arma::uvec, arma::uvec, bool)’:
three_utility_probit_helper_functions.cpp:1518:23: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
1518 | if (!is_finite(vote_m(j, k))) {
| ~~~~~~~~~^~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o pumBayes.so RcppExports.o rtn1.o three_utility_probit_helper_functions.o -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpgdpmkc/R.INSTALL30820e5e172588/pumBayes/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpgdpmkc/R.INSTALL30820e5e172588/pumBayes/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpgdpmkc/R.INSTALL30820e5e172588/pumBayes/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-pumBayes/00new/pumBayes/libs
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘pumBayes’
finding HTML links ... done
calc_waic html
dtnorm html
h116 html
item_char html
post_rank html
predict_ideal html
predict_irt html
predict_pum html
preprocess_rollcall html
sample_pum_dynamic html
sample_pum_static html
scotus.1937.2021 html
tune_hyper html
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (pumBayes)