* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘pubmed.mineR’ ...
** this is package ‘pubmed.mineR’ version ‘1.0.21’
** package ‘pubmed.mineR’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘pubmed.mineR’
    finding HTML links ... done
    Abstracts-class                         html  
    BWI                                     html  
    Find_conclusion                         html  
    GeneToEntrez                            html  
    Genewise-methods                        html  
    Genewise                                html  
    Give_Sentences                          html  
    Give_Sentences_PMC                      html  
    HGNC-class                              html  
    HGNC2UniprotID                          html  
    HGNCdata                                html  
    SentenceToken                           html  
    Yearwise-methods                        html  
    Yearwise                                html  
    additional_info                         html  
    alias_fn                                html  
    altnamesfun                             html  
    cleanabs-methods                        html  
    cleanabs                                html  
    cluster_words                           html  
    co_occurrence_advance                   html  
    co_occurrence_fn                        html  
    combineabs-methods                      html  
    combineabs                              html  
    common_words_new                        html  
    contextSearch-methods                   html  
    contextSearch                           html  
    cos_sim_calc                            html  
    cos_sim_calc_boot                       html  
    currentabs_fn                           html  
    find_intro_conc_html                    html  
    gene_atomization                        html  
    genes_BWI                               html  
    get_DOIs                                html  
    get_MedlinePlus                         html  
    get_NMids                               html  
    get_PMCIDS                              html  
    get_PMCtable                            html  
    get_Sequences                           html  
    get_gene_sentences                      html  
    get_original_term                       html  
    get_original_term2                      html  
    getabs-methods                          html  
    getabs                                  html  
    getabsT-methods                         html  
    getabsT                                 html  
    head_abbrev                             html  
    input_for_find_intro_conc_html          html  
    local_uniprotfun                        html  
    names_fn                                html  
    new_xmlreadabs                          html  
    official_fn                             html  
    pmids_to_abstracts                      html  
    previousabs_fn                          html  
    prevsymbol_fn                           html  
    printabs                                html  
    pubtator3_function                      html  
    pubtator_function                       html  
    pubtator_function_JSON                  html  
    pubtator_result_list_to_table           html  
    readabs                                 html  
    readabsnew                              html  
    ready                                   html  
    removeabs-methods                       html  
    removeabs                               html  
    searchabsL-methods                      html  
    searchabsL                              html  
    searchabsT-methods                      html  
    searchabsT                              html  
    sendabs-methods                         html  
    sendabs                                 html  
    space_quasher                           html  
    subabs-methods                          html  
    subabs                                  html  
    subsetabs-methods                       html  
    subsetabs                               html  
    tdm_for_lsa                             html  
    uniprotfun                              html  
    whichcluster                            html  
    word_associations                       html  
    word_atomizations                       html  
    wordscluster                            html  
    wordsclusterview                        html  
    xmlgene_atomizations                    html  
    xmlgene_atomizations_new                html  
    xmlreadabs                              html  
    xmlword_atomizations                    html  
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (pubmed.mineR)