* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’ * installing *source* package ‘ptm’ ... ** package ‘ptm’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘ptm’ finding HTML links ... done aa.at html aa.comp html abundance html ac.scan html acc.dssp html atom.dpx html bg.go html ddG.profile html ddG.ptm html dis.scan html dot-get.exepath html dot-get.url html dpx html env.Ztest html env.extract html env.matrices html env.plot html find.aaindex html foldx.assembly html foldx.mut html foldx.stab html get.area html get.go html get.seq html gl.scan html gracefully_fail html hdfisher.go html hmeto html id.features html id.mapping html imutant html is.at html kegg.uniprot html me.scan html meto.list html meto.scan html meto.search html mkdssp html msa html net.go html ni.scan html p.scan html pairwise.dist html parse.dssp html pdb.chain html pdb.quaternary html pdb.select html pdb.seq html pdb.uniprot html pdb2uniprot html prot2codon html ptm.plot html ptm.scan html reg.scan html renum html renum.meto html renum.pdb html res.dpx html saro.dist html saro.geometry html saro.motif html search.go html sni.scan html species.kegg html species.mapping html stru.part html su.scan html term.go html ub.scan html uniprot.kegg html uniprot.pdb html uniprot2pdb html xprod html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ptm)