* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘ptm’ ...
** package ‘ptm’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘ptm’
    finding HTML links ... done
    aa.at                                   html  
    aa.comp                                 html  
    abundance                               html  
    ac.scan                                 html  
    acc.dssp                                html  
    atom.dpx                                html  
    bg.go                                   html  
    ddG.profile                             html  
    ddG.ptm                                 html  
    dis.scan                                html  
    dot-get.exepath                         html  
    dot-get.url                             html  
    dpx                                     html  
    env.Ztest                               html  
    env.extract                             html  
    env.matrices                            html  
    env.plot                                html  
    find.aaindex                            html  
    foldx.assembly                          html  
    foldx.mut                               html  
    foldx.stab                              html  
    get.area                                html  
    get.go                                  html  
    get.seq                                 html  
    gl.scan                                 html  
    gracefully_fail                         html  
    hdfisher.go                             html  
    hmeto                                   html  
    id.features                             html  
    id.mapping                              html  
    imutant                                 html  
    is.at                                   html  
    kegg.uniprot                            html  
    me.scan                                 html  
    meto.list                               html  
    meto.scan                               html  
    meto.search                             html  
    mkdssp                                  html  
    msa                                     html  
    net.go                                  html  
    ni.scan                                 html  
    p.scan                                  html  
    pairwise.dist                           html  
    parse.dssp                              html  
    pdb.chain                               html  
    pdb.quaternary                          html  
    pdb.select                              html  
    pdb.seq                                 html  
    pdb.uniprot                             html  
    pdb2uniprot                             html  
    prot2codon                              html  
    ptm.plot                                html  
    ptm.scan                                html  
    reg.scan                                html  
    renum                                   html  
    renum.meto                              html  
    renum.pdb                               html  
    res.dpx                                 html  
    saro.dist                               html  
    saro.geometry                           html  
    saro.motif                              html  
    search.go                               html  
    sni.scan                                html  
    species.kegg                            html  
    species.mapping                         html  
    stru.part                               html  
    su.scan                                 html  
    term.go                                 html  
    ub.scan                                 html  
    uniprot.kegg                            html  
    uniprot.pdb                             html  
    uniprot2pdb                             html  
    xprod                                   html  
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ptm)