* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘ptinpoly’ ...
** package ‘ptinpoly’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (Debian 13.2.0-25) 13.2.0’
make[1]: Entering directory '/tmp/Rtmprnfb8f/R.INSTALL1bf8c58c6ca0c/ptinpoly/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c PtInPoly_031009A.cc -o PtInPoly_031009A.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c kodtree.cc -o kodtree.o
kodtree.cc: In function ‘void sort1ShellFromaTri(int, double (*)[3], int, int (*)[3], int, int (*)[3])’:
kodtree.cc:825:13: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  825 |             if(tnb < 0) throw(7);  /* JMM : 8/17/2014 : Fix Seg Fault as per B. Ripley and J. Liu */
      |             ^~
kodtree.cc:826:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  826 |                         if(trisort[tnb]==0){
      |                         ^~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c pinpolyhedronA.cc -o pinpolyhedronA.o
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o ptinpoly.so PtInPoly_031009A.o kodtree.o pinpolyhedronA.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/Rtmprnfb8f/R.INSTALL1bf8c58c6ca0c/ptinpoly/src'
make[1]: Entering directory '/tmp/Rtmprnfb8f/R.INSTALL1bf8c58c6ca0c/ptinpoly/src'
make[1]: Leaving directory '/tmp/Rtmprnfb8f/R.INSTALL1bf8c58c6ca0c/ptinpoly/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-ptinpoly/00new/ptinpoly/libs
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘ptinpoly’
    finding HTML links ... done
    blocks2vf                               html  
    comb                                    html  
    cube                                    html  
    fractal                                 html  
    pip2d                                   html  
    pip3d                                   html  
    spiral                                  html  
    vf2blocks                               html  
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* creating tarball
packaged installation of ‘ptinpoly’ as ‘ptinpoly_2.8_R_x86_64-pc-linux-gnu.tar.gz’
* DONE (ptinpoly)