* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘pscl’ ...
** package ‘pscl’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’
make[1]: Entering directory '/tmp/Rtmp2N83tK/R.INSTALL1cf7de3c07f379/pscl/src'
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c IDEAL.c -o IDEAL.o
IDEAL.c: In function ‘IDEAL’:
IDEAL.c:31:39: warning: variable ‘sd’ set but not used [-Wunused-but-set-variable]
31 | double **xp, **xpv, *xtemp, *btemp, sd;
| ^~
IDEAL.c:30:58: warning: variable ‘nm_doub’ set but not used [-Wunused-but-set-variable]
30 | double **ystar, **x, **xreg, **y, **beta, **bp, **bpv, nm_doub, iterPerCent;
| ^~~~~~~
IDEAL.c:29:38: warning: variable ‘nm’ set but not used [-Wunused-but-set-variable]
29 | int inloop, **ok, burnin, n, m, d, nm, maxiter, thin, impute, verbose;
| ^~
In file included from /usr/include/stdio.h:906,
from IDEAL.c:2:
In function ‘fprintf’,
inlined from ‘IDEAL’ at IDEAL.c:252:2:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:79:10: warning: ‘ofp’ may be used uninitialized [-Wmaybe-uninitialized]
79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
IDEAL.c: In function ‘IDEAL’:
IDEAL.c:32:9: note: ‘ofp’ was declared here
32 | FILE *ofp;
| ^~~
IDEAL.c:28:10: warning: ‘xocursor’ may be used uninitialized [-Wmaybe-uninitialized]
28 | int e, xocursor, bocursor, xlength, blength, q, iter;
| ^~~~~~~~
IDEAL.c:28:20: warning: ‘bocursor’ may be used uninitialized [-Wmaybe-uninitialized]
28 | int e, xocursor, bocursor, xlength, blength, q, iter;
| ^~~~~~~~
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c bayesreg.c -o bayesreg.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c check.c -o check.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c chol.c -o chol.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c crossprod.c -o crossprod.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dmatTOdvec.c -o dmatTOdvec.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dtnorm.c -o dtnorm.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dvecTOdmat.c -o dvecTOdmat.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c gaussj.c -o gaussj.o
gaussj.c: In function ‘gaussj’:
gaussj.c:39:8: warning: ‘icol’ may be used uninitialized [-Wmaybe-uninitialized]
39 | if (irow != icol) {
| ^
gaussj.c:17:9: note: ‘icol’ was declared here
17 | int i,icol,irow,j,k,l,ll;
| ^~~~
gaussj.c:39:8: warning: ‘irow’ may be used uninitialized [-Wmaybe-uninitialized]
39 | if (irow != icol) {
| ^
gaussj.c:17:14: note: ‘irow’ was declared here
17 | int i,icol,irow,j,k,l,ll;
| ^~~~
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c pi.c -o pi.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c predict.c -o predict.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c printmat.c -o printmat.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c renormalize.c -o renormalize.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rigamma.c -o rigamma.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rmvnorm.c -o rmvnorm.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c updateb.c -o updateb.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c updatex.c -o updatex.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c updatey.c -o updatey.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c util.c -o util.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c xchol.c -o xchol.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c xreg.c -o xreg.o
gcc-13 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o pscl.so IDEAL.o bayesreg.o check.o chol.o crossprod.o dmatTOdvec.o dtnorm.o dvecTOdmat.o gaussj.o init.o pi.o predict.o printmat.o renormalize.o rigamma.o rmvnorm.o updateb.o updatex.o updatey.o util.o xchol.o xreg.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/Rtmp2N83tK/R.INSTALL1cf7de3c07f379/pscl/src'
make[1]: Entering directory '/tmp/Rtmp2N83tK/R.INSTALL1cf7de3c07f379/pscl/src'
make[1]: Leaving directory '/tmp/Rtmp2N83tK/R.INSTALL1cf7de3c07f379/pscl/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-pscl/00new/pscl/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘pscl’
finding HTML links ... done
AustralianElectionPolling html
AustralianElections html
EfronMorris html
RockTheVote html
UKHouseOfCommons html
absentee html
admit html
betaHPD html
bioChemists html
ca2006 html
computeMargins html
constrain.items html
constrain.legis html
convertCodes html
dropRollCall html
dropUnanimous html
extractRollCallObject html
hitmiss html
hurdle html
hurdle.control html
hurdletest html
ideal html
idealToMCMC html
igamma html
iraqVote html
nj07 html
ntable html
odTest html
pR2 html
partycodes html
plot.ideal html
plot.predict.ideal html
plot.seatsVotes html
politicalInformation html
postProcess html
predict.hurdle html
predict.ideal html
predict.zeroinfl html
predprob html
predprob.glm html
predprob.ideal html
presidentialElections html
prussian html
readKH html
rollcall html
s109 html
sc9497 html
seatsVotes html
simpi html
state.info html
summary.ideal html
summary.rollcall html
tracex html
unionDensity html
vectorRepresentation html
vote92 html
vuong html
zeroinfl html
zeroinfl.control html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (pscl)