* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘protti’ ...
** this is package ‘protti’ version ‘0.9.1’
** package ‘protti’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘protti’
    finding HTML links ... done
    analyse_functional_network              html  
    anova_protti                            html  
    assign_missingness                      html  
    assign_peptide_type                     html  
    barcode_plot                            html  
    calculate_aa_scores                     html  
    calculate_diff_abundance                html  
    calculate_go_enrichment                 html  
    calculate_imputation                    html  
    calculate_kegg_enrichment               html  
    calculate_protein_abundance             html  
    calculate_sequence_coverage             html  
    calculate_treatment_enrichment          html  
    correct_lip_for_abundance               html  
    create_queue                            html  
    create_structure_contact_map            html  
    create_synthetic_data                   html  
    diff_abundance                          html  
    drc_4p                                  html  
    drc_4p_plot                             html  
    extract_metal_binders                   html  
    fetch_alphafold_aligned_error           html  
    fetch_alphafold_prediction              html  
    fetch_chebi                             html  
    fetch_eco                               html  
    fetch_go                                html  
    fetch_kegg                              html  
    fetch_metal_pdb                         html  
    fetch_mobidb                            html  
    fetch_pdb                               html  
    fetch_pdb_structure                     html  
    fetch_quickgo                           html  
    fetch_uniprot                           html  
    fetch_uniprot_proteome                  html  
    filter_cv                               html  
    find_all_subs                           html  
    find_chebis                             html  
    find_peptide                            html  
    find_peptide_in_structure               html  
    fit_drc_4p                              html  
    go_enrichment                           html  
    impute                                  html  
    kegg_enrichment                         html  
    mako_colours                            html  
    map_peptides_on_structure               html  
    median_normalisation                    html  
    metal_chebi_uniprot                     html  
    metal_go_slim_subset                    html  
    metal_list                              html  
    network_analysis                        html  
    normalise                               html  
    parallel_create_structure_contact_map   html  
    parallel_fit_drc_4p                     html  
    peptide_profile_plot                    html  
    peptide_type                            html  
    plot_drc_4p                             html  
    plot_peptide_profiles                   html  
    plot_pval_distribution                  html  
    predict_alphafold_domain                html  
    protti_colours                          html  
    ptsi_pgk                                html  
    pval_distribution_plot                  html  
    qc_charge_states                        html  
    qc_contaminants                         html  
    qc_cvs                                  html  
    qc_data_completeness                    html  
    qc_ids                                  html  
    qc_intensity_distribution               html  
    qc_median_intensities                   html  
    qc_missed_cleavages                     html  
    qc_pca                                  html  
    qc_peak_width                           html  
    qc_peptide_type                         html  
    qc_proteome_coverage                    html  
    qc_ranked_intensities                   html  
    qc_sample_correlation                   html  
    qc_sequence_coverage                    html  
    randomise_queue                         html  
    rapamycin_10uM                          html  
    rapamycin_dose_response                 html  
    read_protti                             html  
    replace_identified_by_x                 html  
    scale_protti                            html  
    sequence_coverage                       html  
    split_metal_name                        html  
    treatment_enrichment                    html  
    try_query                               html  
    ttest_protti                            html  
    viridis_colours                         html  
    volcano_plot                            html  
    volcano_protti                          html  
    woods_plot                              html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (protti)