* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘ppmSuite’ ...
** package ‘ppmSuite’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’
using Fortran compiler: ‘GNU Fortran (Debian 13.2.0-13) 13.2.0’
make[1]: Entering directory '/tmp/RtmpwPI8r3/R.INSTALL2ab7116668f890/ppmSuite/src'
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c Rutil.c -o Rutil.o
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c ToolsDF.f -o ToolsDF.o
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c ToolsGS.f -o ToolsGS.o
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c ToolsML.f -o ToolsML.o
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c ToolsPD.f -o ToolsPD.o
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c ToolsPM.f -o ToolsPM.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ToolsR.c -o ToolsR.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c bivariate.curvecluster.c -o bivariate.curvecluster.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c curvecluster.c -o curvecluster.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c gaussian.ppmx.c -o gaussian.ppmx.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c gaussian.ppmx.missing.c -o gaussian.ppmx.missing.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c matrix.c -o matrix.o
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c mcmcbetas.f -o mcmcbetas.o
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c mcmclogitp.f -o mcmclogitp.o
gfortran-13 -fpic -g -O2 -Wall -mtune=native -c mcmclogitp2.f -o mcmclogitp2.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mcmcloop.sppm.c -o mcmcloop.sppm.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ordinal.ppmx.c -o ordinal.ppmx.o
In function ‘ordinal_ppmx’,
inlined from ‘ORDINAL_PPMX’ at ordinal.ppmx.c:1760:3:
ordinal.ppmx.c:991:16: warning: ‘mn’ may be used uninitialized [-Wmaybe-uninitialized]
991 | _zi[j] = rtnorm(mn, sqrt(_sig2h[_Si[j]-1]), co[y[j]], co[y[j]+1]);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ordinal.ppmx.c: In function ‘ORDINAL_PPMX’:
ordinal.ppmx.c:207:53: note: ‘mn’ was declared here
207 | double auxreal, sumxtmp, sumx2tmp, npdN,npdY,npd, mn, xcontmp, uu, xb=0;
| ^~
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ordinal.ppmx.missing.c -o ordinal.ppmx.missing.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c routine.rppmx.c -o routine.rppmx.o
gcc-13 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o ppmSuite.so Rutil.o ToolsDF.o ToolsGS.o ToolsML.o ToolsPD.o ToolsPM.o ToolsR.o bivariate.curvecluster.o curvecluster.o gaussian.ppmx.o gaussian.ppmx.missing.o init.o matrix.o mcmcbetas.o mcmclogitp.o mcmclogitp2.o mcmcloop.sppm.o ordinal.ppmx.o ordinal.ppmx.missing.o routine.rppmx.o -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpwPI8r3/R.INSTALL2ab7116668f890/ppmSuite/src'
make[1]: Entering directory '/tmp/RtmpwPI8r3/R.INSTALL2ab7116668f890/ppmSuite/src'
make[1]: Leaving directory '/tmp/RtmpwPI8r3/R.INSTALL2ab7116668f890/ppmSuite/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-ppmSuite/00new/ppmSuite/libs
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘ppmSuite’
finding HTML links ... done
SIMCE html
bear html
ccp_ppm html
curve_ppmx html
gaussian_ppmx html
icp_ppm html
ordinal_ppmx html
ozone html
rppmx html
scallops html
sppm html
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ppmSuite)