* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘polysat’ ...
** this is package ‘polysat’ version ‘1.7-7’
** package ‘polysat’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.3.0-10) 14.3.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpDqa9SC/R.INSTALL3f761a618f3542/polysat/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c deSilvaFuncs.cpp -o deSilvaFuncs.o
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o polysat.so RcppExports.o deSilvaFuncs.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpDqa9SC/R.INSTALL3f761a618f3542/polysat/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpDqa9SC/R.INSTALL3f761a618f3542/polysat/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpDqa9SC/R.INSTALL3f761a618f3542/polysat/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-polysat/00new/polysat/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘polysat’
    finding HTML links ... done
    AllopolyTutorialData                    html  
    Bruvo.distance                          html  
    Bruvo2.distance                         html  
    FCRinfo                                 html  
    Lynch.distance                          html  
    PIC                                     html  
    Samples                                 html  
    alleleCorrelations                      html  
    alleleDiversity                         html  
    assignClones                            html  
    calcFst                                 html  
    catalanAlleles                          html  
    deSilvaFreq                             html  
    deleteSamples                           html  
    editGenotypes                           html  
    estimatePloidy                          html  
    find.missing.gen                        html  
    freq.to.genpop                          html  
    genIndex                                html  
    genambig-class                          html  
    genambig.to.genbinary                   html  
    genbinary-class                         html  
    gendata-class                           html  
    gendata.to.genind                       html  
    genotypeDiversity                       html  
    genotypeProbs                           html  
    isMissing                               html  
    meandist.from.array                     html  
    meandistance.matrix                     html  
    merge-methods                           html  
    mergeAlleleAssignments                  html  
    pld                                     html  
    ploidysuper-class                       html  
    plotSSAllo                              html  
    polysat-internal                        html  
    read.ATetra                             html  
    read.GeneMapper                         html  
    read.GenoDive                           html  
    read.POPDIST                            html  
    read.SPAGeDi                            html  
    read.STRand                             html  
    read.Structure                          html  
    read.Tetrasat                           html  
    recodeAllopoly                          html  
    reformatPloidies                        html  
    simAllopoly                             html  
    simgen                                  html  
    simpleFreq                              html  
    testgenotypes                           html  
    viewGenotypes                           html  
    write.ATetra                            html  
    write.GeneMapper                        html  
    write.GenoDive                          html  
    write.POPDIST                           html  
    write.SPAGeDi                           html  
    write.Structure                         html  
    write.Tetrasat                          html  
    write.freq.SPAGeDi                      html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (polysat)