* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘polyqtlR’ ...
** this is package ‘polyqtlR’ version ‘0.1.1’
** package ‘polyqtlR’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.3.0-10) 14.3.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpSVUvz3/R.INSTALL1cc3f577612119/polyqtlR/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c forwardbackward.cpp -o forwardbackward.o
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o polyqtlR.so RcppExports.o forwardbackward.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpSVUvz3/R.INSTALL1cc3f577612119/polyqtlR/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpSVUvz3/R.INSTALL1cc3f577612119/polyqtlR/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpSVUvz3/R.INSTALL1cc3f577612119/polyqtlR/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-polyqtlR/00new/polyqtlR/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘polyqtlR’
    finding HTML links ... done
    BLUE                                    html  
    BLUEs.pheno                             html  
    GIC_4x                                  html  
    IBD_4x                                  html  
    PVE                                     html  
    Phenotypes_4x                           html  
    QTLscan                                 html  
    Rec_Data_4x                             html  
    SNP_dosages.4x                          html  
    check_cofactors                         html  
    convert_mappoly_to_phased.maplist       html  
    count_recombinations                    html  
    estimate_GIC                            html  
    estimate_IBD                            html  
    exploreQTL                              html  
    findPeak                                html  
    findSupport                             html  
    import_IBD                              html  
    impute_dosages                          html  
    maxL_IBD                                html  
    meiosis_report                          html  
    mr.ls                                   html  
    phased_maplist.4x                       html  
    plotQTL                                 html  
    plotRecLS                               html  
    polyqtlR-package                        html  
    qtl_LODs.4x                             html  
    segList_2x                              html  
    segList_3x                              html  
    segList_3x_24                           html  
    segList_4x                              html  
    segList_6x                              html  
    segMaker                                html  
    singleMarkerRegression                  html  
    spline_IBD                              html  
    thinmap                                 html  
    visualiseGIC                            html  
    visualiseHaplo                          html  
    visualisePairing                        html  
    visualiseQTLeffects                     html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (polyqtlR)