• using R version 4.4.1 Patched (2024-08-05 r86980)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-14 (Debian 14.2.0-3) 14.2.0     GNU Fortran (Debian 14.2.0-3) 14.2.0
• running under: Debian GNU/Linux trixie/sid
• using session charset: UTF-8
• checking for file ‘pollimetry/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘pollimetry’ version ‘1.0.1’
• checking package namespace information ... OK
• checking package dependencies ... NOTE Package suggested but not available for checking: ‘pollimetrydata’
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘pollimetry’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [4s/5s] OK
• checking whether the package can be loaded with stated dependencies ... [4s/4s] OK
• checking whether the package can be unloaded cleanly ... [4s/4s] OK
• checking whether the namespace can be loaded with stated dependencies ... [4s/4s] OK
• checking whether the namespace can be unloaded cleanly ... [4s/5s] OK
• checking loading without being on the library search path ... [3s/4s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [18s/21s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking examples ... [11s/15s] ERROR Running examples in ‘pollimetry-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: bodysize > ### Title: Converts the intertegular distance (IT) and co-variates to body > ### size in dry weight (mg) for bees or hoverflies. > ### Aliases: bodysize > > ### ** Examples > > example=cbind.data.frame(IT=c(1.3,2.3), + Sex=c("Female","Male"), + Subfamily=c("Syrphinae","Eristalinae"), + Region=c("Australasia","Europe"), + Species=c("Sphaerophoria_macrogaster","Myathropa_florea")) > bodysize(x=example,taxa="hov",type="taxo") Loading required namespace: pollimetrydata Failed with error: ‘there is no package called ‘pollimetrydata’’ Downloading data from: https://github.com/liamkendall/pollimetrydata/raw/master/data/hov_tax_mod.rdata SHA-1 hash of the downloaded data file is: 8fabe989dfed6c91d8e5834ad224ff4865b76b7f Loading required package: rstan Loading required package: StanHeaders Error: package or namespace load failed for ‘rstan’ in .doLoadActions(where, attach):  error in load action .__A__.1 for package rstan: Rcpp::loadModule(module = "class_model_base", what = TRUE, env = ns, : Unable to load module "class_model_base": attempt to apply non-function Error in .requirePackage(package) :   unable to find required package ‘rstan’ Calls: bodysize ... .findInheritedMethods -> getClass -> getClassDef -> .requirePackage Execution halted
• checking PDF version of manual ... [4s/7s] OK
• checking HTML version of manual ... [0s/1s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 1 ERROR, 1 NOTE