* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘pliman’ ...
** package ‘pliman’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (Debian 13.2.0-13) 13.2.0’
make[1]: Entering directory '/tmp/RtmpFiYIsF/R.INSTALL31f16a12ebec3c/pliman/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c code.cpp -o code.o
code.cpp: In function ‘Rcpp::IntegerMatrix helper_guo_hall(Rcpp::IntegerMatrix)’:
code.cpp:750:8: warning: variable ‘set’ set but not used [-Wunused-but-set-variable]
750 | auto set = [&](int col, int row) { data2(row, col) = 255; };
| ^~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c code_polygons.cpp -o code_polygons.o
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o pliman.so RcppExports.o code.o code_polygons.o -fopenmp -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpFiYIsF/R.INSTALL31f16a12ebec3c/pliman/src'
make[1]: Entering directory '/tmp/RtmpFiYIsF/R.INSTALL31f16a12ebec3c/pliman/src'
make[1]: Leaving directory '/tmp/RtmpFiYIsF/R.INSTALL31f16a12ebec3c/pliman/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-pliman/00new/pliman/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘pliman’
finding HTML links ... done
analyze_objects html
analyze_objects_shp html
apply_fun_to_imgs html
as_image html
calibrate html
contours html
custom_palette html
dist_transform html
efourier html
efourier_coefs html
efourier_error html
efourier_inv html
efourier_norm html
efourier_power html
efourier_shape html
ellipse html
get_pliman_viewer html
ggplot_color html
image_align html
image_augment html
image_binary html
image_combine html
image_create html
image_expand html
image_index html
image_prepare html
image_segment html
image_segment_kmeans html
image_segment_manual html
image_segment_mask html
image_shp html
image_square html
image_thinning_guo_hall html
image_to_mat html
image_view html
landmarks html
landmarks_add html
landmarks_angle html
landmarks_dist html
landmarks_regradi html
leading_zeros html
make_brush html
make_mask html
measure_disease html
measure_disease_byl html
measure_disease_shp html
mosaic_crop html
mosaic_index html
mosaic_input html
mosaic_prepare html
mosaic_to_pliman html
mosaic_to_rgb html
mosaic_view html
object_edge html
object_export html
object_export_shp html
object_label html
object_map html
object_mark html
object_rgb html
object_split html
object_split_shp html
object_to_color html
otsu html
palettes html
pipe html
pixel_index html
pliman_images html
pliman_viewer html
plot.image_shp html
plot_index html
plot_index_shp html
plot_lw html
poly_apex_base_angle html
poly_pcv html
poly_width_at html
prepare_to_shp html
random_color html
sad html
separate_col html
set_pliman_viewer html
summary_index html
utils_colorspace html
utils_dpi html
utils_file html
utils_image html
utils_measures html
utils_objects html
utils_pca html
utils_pick html
utils_polygon html
utils_polygon_plot html
utils_rows_cols html
utils_shapes html
utils_stats html
utils_transform html
utils_wd html
watershed2 html
** building package indices
** testing if installed package can be loaded from temporary location
To use viewer = 'mapview', first install the required packages:mapview, mapedit, leaflet, leafem
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
To use viewer = 'mapview', first install the required packages:mapview, mapedit, leaflet, leafem
** testing if installed package keeps a record of temporary installation path
* DONE (pliman)