* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘pliman’ ...
** this is package ‘pliman’ version ‘3.1.1’
** package ‘pliman’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-14 (Debian 14.3.0-5) 14.3.0’
using C++ compiler: ‘g++-14 (Debian 14.3.0-5) 14.3.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpf5hdvG/R.INSTALL1a2a48b25803f/pliman/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo.h:29,
from RcppExports.cpp:4:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.’
71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
| ^
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c adsf.c -o adsf.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c code.cpp -o code.o
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo.h:29,
from code.cpp:1:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.’
71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
| ^
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c code_polygons.cpp -o code_polygons.o
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo.h:29,
from code_polygons.cpp:1:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.’
71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
| ^
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c line_segment_detector.cpp -o line_segment_detector.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lsd.c -o lsd.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c object_contours.cpp -o object_contours.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_canny.cpp -o rcpp_canny.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c smooth_contours.c -o smooth_contours.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tools.c -o tools.o
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o pliman.so RcppExports.o adsf.o code.o code_polygons.o line_segment_detector.o lsd.o object_contours.o rcpp_canny.o smooth_contours.o tools.o -fopenmp -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -lpng -lfftw3 -lm -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpf5hdvG/R.INSTALL1a2a48b25803f/pliman/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpf5hdvG/R.INSTALL1a2a48b25803f/pliman/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpf5hdvG/R.INSTALL1a2a48b25803f/pliman/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-pliman/00new/pliman/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘pliman’
finding HTML links ... done
analyze_objects html
analyze_objects_minimal html
analyze_objects_shp html
apply_fun_to_imgs html
as_image html
calibrate html
ccc html
clear_pliman_cache html
contours html
custom_palette html
dist_transform html
efourier html
efourier_coefs html
efourier_error html
efourier_inv html
efourier_norm html
efourier_power html
efourier_shape html
ellipse html
entropy html
get_pliman_viewer html
get_uuid html
ggplot_color html
image_align html
image_alpha html
image_augment html
image_binary html
image_canny_edge html
image_combine html
image_contour_line html
image_create html
image_expand html
image_index html
image_label html
image_line_segment html
image_prepare html
image_segment html
image_segment_kmeans html
image_segment_manual html
image_segment_mask html
image_shp html
image_square html
image_thinning_guo_hall html
image_to_mat html
image_view html
landmarks html
landmarks_add html
landmarks_angle html
landmarks_dist html
landmarks_regradi html
leading_zeros html
line_on_halfplot html
make_brush html
make_mask html
measure_disease html
measure_disease_byl html
measure_disease_shp html
measure_injury html
mosaic_aggregate html
mosaic_analyze html
mosaic_analyze_iter html
mosaic_chm html
mosaic_chm_extract html
mosaic_chm_mask html
mosaic_classify html
mosaic_clip html
mosaic_crop html
mosaic_draw html
mosaic_epsg html
mosaic_extract html
mosaic_hist html
mosaic_index html
mosaic_index2 html
mosaic_input html
mosaic_interpolate html
mosaic_lonlat2epsg html
mosaic_plot html
mosaic_plot_rgb html
mosaic_prepare html
mosaic_project html
mosaic_resample html
mosaic_rotate html
mosaic_segment html
mosaic_segment_pick html
mosaic_to_pliman html
mosaic_to_rgb html
mosaic_vectorize html
mosaic_view html
object_bbox html
object_edge html
object_export html
object_export_shp html
object_label html
object_map html
object_mark html
object_rgb html
object_scatter html
object_split html
object_split_shp html
object_to_color html
otsu html
palettes html
pipe html
pixel_index html
pliman_images html
pliman_indexes_ican_compute html
pliman_viewer html
plot.image_shp html
plot_bbox html
plot_id html
plot_index html
plot_index_shp html
plot_line_segment html
plot_lw html
poly_apex_base_angle html
poly_pcv html
poly_width_at html
prepare_to_shp html
random_color html
sad html
sentinel_to_tif html
separate_col html
set_pliman_viewer html
shapefile_build html
shapefile_edit html
shapefile_interpolate html
shapefile_measures html
shapefile_operations html
shapefile_plot html
shapefile_surface html
summary_index html
utils_colorspace html
utils_dpi html
utils_file html
utils_image html
utils_indexes html
utils_measures html
utils_objects html
utils_pca html
utils_pick html
utils_polygon html
utils_polygon_plot html
utils_rows_cols html
utils_shapefile html
utils_shapes html
utils_stats html
utils_transform html
utils_wd html
uuid html
watershed2 html
** building package indices
** testing if installed package can be loaded from temporary location
✖ Package EBImage is required. Please install it from <https://bioconductor.org/packages/EBImage>
! To use `viewer = 'mapview'`, install the following packages: mapview, mapedit, leaflet, and leafem
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
✖ Package EBImage is required. Please install it from <https://bioconductor.org/packages/EBImage>
! To use `viewer = 'mapview'`, install the following packages: mapview, mapedit, leaflet, and leafem
** testing if installed package keeps a record of temporary installation path
* DONE (pliman)